| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,736,500 – 18,736,614 |
| Length | 114 |
| Max. P | 0.881904 |
| Location | 18,736,500 – 18,736,614 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.17 |
| Mean single sequence MFE | -41.08 |
| Consensus MFE | -25.36 |
| Energy contribution | -27.20 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881904 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18736500 114 + 22407834 AAAGUGGGCGGCGAACUGGAGGGCAGCUCUGCUGGCCUGCAGAUGAUGGUCGAGUGGAUGCAGGCUAGGAGCCAGGGGAAUCAUCUCGGGGACGGGGAGAAGAU-----CAAAAGCCAG- ......((((((((.(((.....))).))..((((((((((..(.((......)).).))))))))))..)))..((...((..((((....))))..))...)-----)....)))..- ( -41.90) >DroSec_CAF1 163 114 + 1 AAAGUGGGCGGCGAACUGGAGGGCAGCUCUGCUGGCCUGCAGAUGAUGGUCGAGUGGAUGCAGGCCAGGAGCCAGGGGAACCAUCUCGGGGACGGGGAGAAGAU-----CAAAAGCCAG- ......((((((((.(((.....))).))..((((((((((..(.((......)).).))))))))))..))).((....)).(((((....))))).......-----.....)))..- ( -45.60) >DroSim_CAF1 163 114 + 1 AAAGUGGGCGGCGAGCUGGAGGGCAGCUCUGCUGGCCUGCAGACGAUGGUCGAGUGGAUGCAGGCCAGGAGCCAGGGGAACCAUCUCGGGGACGGGGAGAAGAU-----CAAAAGCCAG- ......((((((((((((.....))))))..((((((((((..((.........))..))))))))))..))).((....)).(((((....))))).......-----.....)))..- ( -53.90) >DroEre_CAF1 168 114 + 1 AAAGUGGGCGGCGAACUGGAGGGCACCGAGACUGGUCUGCAGAUGAUGGUCGAGUGGAUGCGGGCGAGGAGCCACGGGAACGAUCUCGGGGACGGGGAGAAGAU-----CAAAAGCCAG- ......((((((...((.(...((((((.((((((((....)))..)))))...))).)))...).))..))).((....)).(((((....))))).......-----.....)))..- ( -36.20) >DroYak_CAF1 163 114 + 1 AAAGUGGGCGGCGAACUGGAGGGCACGGAGACUGGUCUGCAGAUGAUGGUCGAAUGGAUACAGACCAGGAGCCAGGGGAACGAUCUCGGGGACGGGGAGAAGAU-----CAAAAGCCAG- ......((((((...(((.(((.((.(....))).))).)))....(((((...........)))))...)))..........(((((....))))).......-----.....)))..- ( -37.40) >DroAna_CAF1 169 106 + 1 AAGGUGGGCGGCGAACUGGAGGGCAGCGAGGUGGAUCUCAACCAGAUGGUAGAGUGGCUGAUG--------------GAAAAAGCUCGUCCGAAGGUGGACGAUGGUUCCAGUAACCAGA ...............((((....((((((((....)))).(((....)))......)))).((--------------(((.....(((((((....)))))))...)))))....)))). ( -31.50) >consensus AAAGUGGGCGGCGAACUGGAGGGCAGCGAGGCUGGCCUGCAGAUGAUGGUCGAGUGGAUGCAGGCCAGGAGCCAGGGGAACCAUCUCGGGGACGGGGAGAAGAU_____CAAAAGCCAG_ ......(((((((..(....)..).......((((((((((..(.((......)).).))))))))))..)))..........(((((....))))).................)))... (-25.36 = -27.20 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:07 2006