Locus 6707

Sequence ID 2L_DroMel_CAF1
Location 18,734,371 – 18,734,491
Length 120
Max. P 0.751047
window10713

overview

Window 3

Location 18,734,371 – 18,734,491
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.33
Mean single sequence MFE -30.12
Consensus MFE -30.28
Energy contribution -30.12
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.31
Structure conservation index 1.01
SVM decision value 0.48
SVM RNA-class probability 0.751047
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18734371 120 - 22407834
UUAAUAAGCCUGACAUUUGAGCAGAGCAUCCACUCGAAGCCAUCGGGUUUCGGUUUUGCGUGUAGGCGUCUGAAAAUAAUAAUUAAAAAAUCGUUUCUAAUGCGGAAAUCUCGCGUUUUU
.......(((((.(((....(((((((....((((((.....))))))....)))))))))))))))...............................(((((((.....)))))))... ( -29.40)
>DroSec_CAF1 26883 120 - 1
UUAAUAAGCCUGACAUUUGAGCAGAGCAUCCACUCGAAGCCAUCGAGUUUCGGUUUUGCGUGUAGGCGUCUGAAAAUAAUAAUUAAAAAAUCGUUUCUAAUGCGGAAAUCUCGCGUUUUU
.......(((((.(((....(((((((....((((((.....))))))....)))))))))))))))...............................(((((((.....)))))))... ( -30.30)
>DroSim_CAF1 25439 120 - 1
UUAAUAAGCCUGACAUUUGAGCAGAGCAUCCACUCGAAGCCAUCGAGUUUCGGUUUUGCGUGUAGGCGUCUGAAAAUAAUAAUUAAAAAAUCGUUUCUAAUGCGGAAAUCUCGCGUUUUU
.......(((((.(((....(((((((....((((((.....))))))....)))))))))))))))...............................(((((((.....)))))))... ( -30.30)
>DroEre_CAF1 26923 120 - 1
UUAAUAAGCCUGACAUUUGAGCAGAGCAUCCACUCGAAGCCAUCGAGUUUCGGUUUUGCGUGUAGGCGUCUGAAAAUAAUAAUUAAAAAAUCGUUUCUAAUGCGGAAAUCUCGCGUUUUC
.......(((((.(((....(((((((....((((((.....))))))....)))))))))))))))...............................(((((((.....)))))))... ( -30.30)
>DroYak_CAF1 26988 120 - 1
UUAAUAAGCCUGACAUUUGAGCAGAGCAUCCACUCGAAGCCAUCGAGUUUCGGUUUUGCGUGUAGGCGUCUGAAAAUAAUAAUUAAAAAAUCGUUUCUAAUGCGGAAAUCUCGCGUUUUU
.......(((((.(((....(((((((....((((((.....))))))....)))))))))))))))...............................(((((((.....)))))))... ( -30.30)
>consensus
UUAAUAAGCCUGACAUUUGAGCAGAGCAUCCACUCGAAGCCAUCGAGUUUCGGUUUUGCGUGUAGGCGUCUGAAAAUAAUAAUUAAAAAAUCGUUUCUAAUGCGGAAAUCUCGCGUUUUU
.......(((((.(((....(((((((....((((((.....))))))....)))))))))))))))...............................(((((((.....)))))))... (-30.28 = -30.12 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:06 2006