| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,733,487 – 18,733,598 |
| Length | 111 |
| Max. P | 0.556910 |
| Location | 18,733,487 – 18,733,598 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.20 |
| Mean single sequence MFE | -36.08 |
| Consensus MFE | -25.48 |
| Energy contribution | -26.88 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18733487 111 + 22407834 AACGUGCGAGGUCUGACCUUCUCGCAGAGCCUGCUGCCUUCGUGUAUAUUGCACCAGUACAUA---UUAUAGUAUAUUGU------AUAUUGUAUCUCGACCUGGGCAUGGGCAUGGGCC ....(((((((........)))))))..(((((.(((((..........(((.((((......---.(((((((((...)------)))))))).......))))))).)))))))))). ( -35.14) >DroSec_CAF1 26012 111 + 1 AACGUGCGAGGUCUGACCUUCUCGCAGAGCCUGCUGCCUUCGACUAUAUUGCACCAGUACAUA---UUACAGUAUAUUGU------AUAUUGUAUCUCGACCUGGGCAUGGGCAUGGGCC ....(((((((........)))))))..(((((.(((((..........(((.((((......---.(((((((((...)------)))))))).......))))))).)))))))))). ( -37.04) >DroSim_CAF1 24567 111 + 1 AACGUGCGAGGUCUGACCUUCUCGCAGAGCCUGCUGCCUUCGACUAUAUUGCACCAGUACAUA---UUACAGUAUAUUGU------AUAUUGUAUCUCGACCUGGGCAUGGGCAUGGGCC ....(((((((........)))))))..(((((.(((((..........(((.((((......---.(((((((((...)------)))))))).......))))))).)))))))))). ( -37.04) >DroEre_CAF1 26038 108 + 1 AACGUGCGAGGUCUGACCUUCUCGCAGAGCCU---GCCUUCGAGUAUAUUGCACCAGUACAUA---UUUUAGUAUAUUGU------AUAUUGUAUCUCGACCUGGGCAUGGGCCUGCGAU .......((((.....)))).((((((.((((---(((((((((((((.((((...((((...---.....))))..)))------)...)))).)))))...))))..)))))))))). ( -36.50) >DroYak_CAF1 26100 117 + 1 AACGUGCGAGGUCUGACCUUCUCGCAGAGCCU---GCCUUCGAGUAUAUUGCACCAGUACAUACUAUUGUACUAUAUUGUUAGAGUCUAUUGUAUCUCGACCUGGGCAUGGGCCUGCAUC .......((((........))))((((.((((---(((((((((((((.((.(((((((((......)))))).((....))).)).)).)))).)))))...))))..))))))))... ( -34.70) >consensus AACGUGCGAGGUCUGACCUUCUCGCAGAGCCUGCUGCCUUCGAGUAUAUUGCACCAGUACAUA___UUAUAGUAUAUUGU______AUAUUGUAUCUCGACCUGGGCAUGGGCAUGGGCC ....(((((((........)))))))..(((((.((((((((((((((..........(((................)))..........)))).)))))...))))))))))....... (-25.48 = -26.88 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:00 2006