Locus 6703

Sequence ID 2L_DroMel_CAF1
Location 18,731,727 – 18,731,847
Length 120
Max. P 0.999774
window10702

overview

Window 2

Location 18,731,727 – 18,731,847
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -32.98
Consensus MFE -31.40
Energy contribution -31.60
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.73
Structure conservation index 0.95
SVM decision value 4.05
SVM RNA-class probability 0.999774
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18731727 120 + 22407834
AAACGUUUUCAAAUCGCACAGCGAAUGAAAACGAAAGAAAAAAUGAAACACAUCGAAAGUGAGCAUAUAACGAAGCGCUAACCGGCAAUGUUGUCGACGUAUCAGAGCGCUCGUAGUGCC
...((((((((..((((...)))).)))))))).................((.(....))).((((...((((.(((((...(((((....))))).(......)))))))))).)))). ( -33.10)
>DroSec_CAF1 24338 120 + 1
AAACGUUUUCAAAUCGCACAGCGAAUGAAAACGAAAGAAAAAAUGAAACACAUCGAAAGUGAGCAUAUAACGAAGCGCUACCCGGCAAUGUUGUCGACGUAUCAGAGCGCUCGUAGUGCC
...((((((((..((((...)))).)))))))).................((.(....))).((((...((((.(((((...(((((....))))).(......)))))))))).)))). ( -33.10)
>DroSim_CAF1 22827 120 + 1
AAACGUUUUCAAAUCGCACAGCGAAUGAAAACGAAAGAAAAAAUGAAACACAUCGAAAGUGAGCAUAUAACGAAGCGCUACCCGGCAAUGUUGUCGACGUAUCAGAGCGCUCGUAGUGCC
...((((((((..((((...)))).)))))))).................((.(....))).((((...((((.(((((...(((((....))))).(......)))))))))).)))). ( -33.10)
>DroEre_CAF1 24576 120 + 1
AAACGUUUCCAAAUCGCACAGCGAAUGAAAACGAAAGAAAAAAUGAAACACAUCGAAAGUGAGCAUAUAACGAAGCGCUCCCCGGCAAUGCUGUCGACGUAUCAGAGCGCUCGUAGUGCC
....(((((....((((...)))).......(....).......))))).((.(....))).((((...((((.((((((...((((....))))((....)).)))))))))).)))). ( -31.70)
>DroYak_CAF1 24526 120 + 1
AAACGUUUUCAAAUCGCACAGCGAAUGAAAACGAAAGAAAAAAUGAAACACAUCGAAAGUGAGCAUAUAACGAAGCGCUCCCCGGCCAUGCUGUCGACGUAUCAGAGCGCUCGUAGUGCC
...((((((((..((((...)))).)))))))).................((.(....))).((((...((((.((((((..((((...))))..((....)).)))))))))).)))). ( -33.90)
>consensus
AAACGUUUUCAAAUCGCACAGCGAAUGAAAACGAAAGAAAAAAUGAAACACAUCGAAAGUGAGCAUAUAACGAAGCGCUACCCGGCAAUGUUGUCGACGUAUCAGAGCGCUCGUAGUGCC
...((((((((..((((...)))).)))))))).................((.(....))).((((...((((.(((((...((((......)))).(......)))))))))).)))). (-31.40 = -31.60 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:56 2006