Locus 6701

Sequence ID 2L_DroMel_CAF1
Location 18,730,481 – 18,730,601
Length 120
Max. P 0.535150
window10698

overview

Window 8

Location 18,730,481 – 18,730,601
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.97
Mean single sequence MFE -32.70
Consensus MFE -26.12
Energy contribution -27.36
Covariance contribution 1.24
Combinations/Pair 1.03
Mean z-score -1.46
Structure conservation index 0.80
SVM decision value 0.00
SVM RNA-class probability 0.535150
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18730481 120 + 22407834
CUUGAUUGAUGGUUUGAUAAUAUGAAGUCGGCUGGCUUGCAUUUUGGGCCUCUGUGGCCAAAAAGGAUUGUUAUGAUGGCCAGUGUGCUGCAAAUGAGUUCAAUUGAAGAUUAUCUUUUA
..(((..((((((((..((((.((((.(((....((..((((....((((((.(..(((.....)).)..)...)).))))...)))).))...))).)))))))).))))))))..))) ( -32.80)
>DroSec_CAF1 23120 114 + 1
CUUGAUUGAUGCUUUGAUAAUAUGAAGUCGGCUGGCUUGUAUUUUGGGCCUCUGUGGCCAA-AAGGAUUGUUAUGAUGGCCGGUGUGCUGCAAAUGAGU-----UGAAGAUUAUCUUUUA
..(((..(((((((..((.((.((.(((..(((((((...(((((.((((.....))))..-.))))).........)))))))..))).)).))..))-----..)))..))))..))) ( -28.30)
>DroSim_CAF1 21610 119 + 1
CUUGAUUGAUGCUUUGAUAAUAUGAAGUCGGCUGGCUUGUAUUUUGGGCCUCUGUGGCCAA-AAGGAUUGUUAUGAUGGCCGGUGUGCUGCAAAUGAGUUCAAUUGAAGAUUAUCUUUUA
..(((..(((((((..((....((((.(((....((..((((..(.((((((.(..(((..-..)).)..)...)).)))).).)))).))...))).))))))..)))..))))..))) ( -28.40)
>DroEre_CAF1 23343 119 + 1
CCUGAUUGAUGGUUUGAUAAUAUGAAGUCGGCUGGCUUGUAUUUUGGGCCUCUGUGGCUCA-CAGGAUUGUUAUGAUGGCCGGUGUGCCGCAAAUGAGUUCAAUUGAAGAUUAUCUUUUA
..(((..((((((((..((((.((((.(((...((((((.....))))))..((((((.((-(.((.(..(....)..))).))).))))))..))).)))))))).))))))))..))) ( -35.70)
>DroYak_CAF1 23282 119 + 1
CUUGAUUGAUGGUUUGAUAAUAUGAAGUCGGCUGGCUUGUAUUUUGGGCCUGUGUGGCUCA-AAGGAUUGUUAUGAUGGCCGGUGUGCCGCACAUGAGUUCAAUUGAAGAUUAUCUUUUA
..(((..((((((((..((((.((((.(((...((((((.....))))))((((((((.((-..((.(..(....)..)))..)).))))))))))).)))))))).))))))))..))) ( -38.30)
>consensus
CUUGAUUGAUGGUUUGAUAAUAUGAAGUCGGCUGGCUUGUAUUUUGGGCCUCUGUGGCCAA_AAGGAUUGUUAUGAUGGCCGGUGUGCUGCAAAUGAGUUCAAUUGAAGAUUAUCUUUUA
..(((..((((((((..((((.((((.(((....((..((((..(.((((..((((((...........))))))..)))).).)))).))...))).)))))))).))))))))..))) (-26.12 = -27.36 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:52 2006