Locus 6700

Sequence ID 2L_DroMel_CAF1
Location 18,730,167 – 18,730,281
Length 114
Max. P 0.999937
window10697

overview

Window 7

Location 18,730,167 – 18,730,281
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.31
Mean single sequence MFE -32.97
Consensus MFE -32.59
Energy contribution -32.59
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.33
Structure conservation index 0.99
SVM decision value 4.67
SVM RNA-class probability 0.999937
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18730167 114 + 22407834
CUUGAGCUGUUAUUGUAGCUGUUCUCCUCUUGUUAUUCUAGCUGAUGAUCUGCCAUCAUCUUCAUCCCGCCAAGAGGAAGCUGCGAAGGCCGAGAUAC------CCACUCUCCUCAACGU
.(((((..((..((((((((....((((((((.......((.(((((......))))).)).........))))))))))))))))..)).((((...------....)))))))))... ( -33.69)
>DroSec_CAF1 22800 120 + 1
CUUGAGCUGUUAUUGUAGCUGUUCUCCUCUUGUUAUUCUAGCUGAUGAUCUGCCAUCAUCUUCAUCCCGCCAAGAGGAAGCUGCGAAGGCCGAGAUACCCAUACCCACUCUCCUCGACGC
((((.(((....((((((((....((((((((.......((.(((((......))))).)).........)))))))))))))))).))))))).......................... ( -32.59)
>DroSim_CAF1 21296 114 + 1
CUUGAGCUGUUAUUGUAGCUGUUCUCCUCUUGUUAUUCUAGCUGAUGAUCUGCCAUCAUCUUCAUCCCGCCAAGAGGAAGCUGCGAAGGCCGAGAUAC------CCACUCUCCUCGACGC
.(((((..((..((((((((....((((((((.......((.(((((......))))).)).........))))))))))))))))..)).((((...------....)))))))))... ( -33.39)
>DroEre_CAF1 23040 109 + 1
CUUGAGCUGUUAUUGUAGCUGUUCUCCUCUUGUUAUUCUAGCUGAUGAUCUGCCAUCAUCUUCAUCCCGCCAAGAGGAAGCUGCGAAGGCCGAGAUAC------CCACUCUCCUC-----
((((.(((....((((((((....((((((((.......((.(((((......))))).)).........)))))))))))))))).)))))))....------...........----- ( -32.59)
>DroYak_CAF1 22981 108 + 1
CUUGAGCUGUUAUUGUAGCUGUUCUCCUCUUGUUAUUCUAGCUGAUGAUCUGCCAUCAUCUUCAUCCCGCCAAGAGGAAGCUGCGAAGGCCGAGAUAC------CCACUCUCUU------
((((.(((....((((((((....((((((((.......((.(((((......))))).)).........)))))))))))))))).)))))))....------..........------ ( -32.59)
>consensus
CUUGAGCUGUUAUUGUAGCUGUUCUCCUCUUGUUAUUCUAGCUGAUGAUCUGCCAUCAUCUUCAUCCCGCCAAGAGGAAGCUGCGAAGGCCGAGAUAC______CCACUCUCCUC_ACG_
((((.(((....((((((((....((((((((.......((.(((((......))))).)).........)))))))))))))))).))))))).......................... (-32.59 = -32.59 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:51 2006