Locus 670

Sequence ID 2L_DroMel_CAF1
Location 1,969,512 – 1,969,625
Length 113
Max. P 0.958234
window1098

overview

Window 8

Location 1,969,512 – 1,969,625
Length 113
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 76.27
Mean single sequence MFE -17.59
Consensus MFE -0.62
Energy contribution -2.26
Covariance contribution 1.64
Combinations/Pair 1.22
Mean z-score -2.22
Structure conservation index 0.04
SVM decision value 1.49
SVM RNA-class probability 0.958234
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1969512 113 - 22407834
UAUAAUGAUAUUGUUUUCUAAUAUCUUAAGU-CCCGACUUAUUUAUUUAAGUCAAAUAAAU-GUUACUUGUACUGCUCCAAGCAACUUCUGUUCAUCAAGAA----AUCCCCAAGUCCU
......(((((((.....)))))))......-...((((((......))))))........-...(((((...(((.....)))..((((........))))----.....)))))... ( -17.30)
>DroSec_CAF1 11972 114 - 1
UAUAAUGAUAUUAUUUUCUAAUAUCUUAAGUUUCCGACUUAUUUAUUUAAGUCAAAUGAAU-AUUUCUUGUAUUGCUCCAAGCAACUACAGCUCAUCAAGAA----AUCCCCAAGCCCU
......(((((((.....)))))))....((((..((((((......))))))........-((((((((....(((............)))....))))))----))....))))... ( -19.10)
>DroSim_CAF1 16150 114 - 1
UAUAAUGAUAUUAUUUUCUAAUAUCUUAAGUUCCCGACUUAUUUAUUUAAUUCAAAUGAAU-AUUUCUUGUACUGCUCCAAGCAACUUCUACUCAUCAAGAA----AUCCCCAAGUCCU
......(((((((.....)))))))..........(((((((((((((.....))))))))-((((((((...(((.....)))............))))))----))....))))).. ( -16.76)
>DroEre_CAF1 21135 94 - 1
UAUAAUAAUAGUAUUUUCUAA--------------------UGUAUGUAAGUUAAAUAAAU-GUUUCUUUUACGACUCCGAGCUACCUCUGCUCAUAAAAAA----AUGCCCAAGUCCU
..........(((((((....--------------------.((.((((((..((((....-))))..))))))))...((((.......)))).....)))----))))......... ( -13.60)
>DroYak_CAF1 19059 119 - 1
UAUACUAAUAUUAUUUUCUAAAAUCGUAAGUUUCCCACUUAUUUACGUAAGUCAAAUAAAUAGUUUUUUUUACUGCUCCACGUUUCUUCUGCUCCUCAAAAGUGAGGAGCCCAAGUGCU
.........(((((((........(((((((.........)))))))..........))))))).................((..(((..((((((((....))))))))..))).)). ( -21.17)
>consensus
UAUAAUGAUAUUAUUUUCUAAUAUCUUAAGUUCCCGACUUAUUUAUUUAAGUCAAAUAAAU_GUUUCUUGUACUGCUCCAAGCAACUUCUGCUCAUCAAGAA____AUCCCCAAGUCCU
...................................((((((......))))))....................(((.....)))................................... ( -0.62 =  -2.26 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:30 2006