| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 242,265 – 242,355 |
| Length | 90 |
| Max. P | 0.805335 |
| Location | 242,265 – 242,355 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.60 |
| Mean single sequence MFE | -32.90 |
| Consensus MFE | -13.97 |
| Energy contribution | -14.36 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.05 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 242265 90 - 22407834 ----------AACGCAGCGGCG--UCGCGUCUUUC----------GACG----CGUAACG-GACAUUUCUGUGUGCGCUGCGUUUAAAAAAUCUGAUGGAUGGAAAUGCACAAAAUA ----------(((((((((((.--.((((((....----------))))----))..(((-((....))))))).))))))))).........((.((.((....)).))))..... ( -30.70) >DroVir_CAF1 40424 98 - 1 AAAAAAAAAAAACGCAGC---G--UCGCGUCCUUC----------GACG----CGUAACGGGAAAUUUCUGUGUGCGCUGCGUUUCAAAAAUCUGAUGGAUGGAAAUGCACAAAAUA .........(((((((((---(--(((((((....----------))))----))..((((((...))))))..)))))))))))........((.((.((....)).))))..... ( -31.40) >DroGri_CAF1 41652 107 - 1 AGCAACAGCAGCAGCAUC---G--UCGCGUCCAUCCGACGACGACGACG----CGUAACG-GACAUUUCUGUGUGCGCUGCGUUUCAAAAAUCUGAUGGAUGGAAAUGCACAAAAUA .((....(((((.((.((---(--(((((((.....)))).)))))).)----)((((((-((....))))).))))))))(((((....(((.....))).)))))))........ ( -39.90) >DroWil_CAF1 43591 92 - 1 ----------AACGCAGCGUCGCGUCGCAUUUGAC----------GACG----CGUAACG-GACAUUUCUGUAUGCGCUGCGUUUCAAAAAUCUGAUGGAUGGAAAUGCACAAAAUA ----------((((((((((((((((((....).)----------))))----))..(((-((....)))))..)))))))))).........((.((.((....)).))))..... ( -33.50) >DroMoj_CAF1 39343 90 - 1 ----------AACGCAGC---G--UUGCGUCCUUU----------GACG--CACGUAACGGGACAUUUCUGUGUGCGCUGCGUUUCAAAAAUCUGAUGGAUGGAAAUGCACAAAAUA ----------..((((((---(--(.(((((....----------))))--))))).((((((...)))))).)))).((((((((....(((.....))).))))))))....... ( -29.50) >DroAna_CAF1 40493 96 - 1 ----------AACGCAGCGGCGUGUCGCGUCCUUC----------GACACGGACGUAACG-GACAUUUCUGUGUGCGCUGCGUUUCAAAAAUCUGAUGGAUGGAAAUGCACAAAAUA ----------...((.(((((((((..(((((...----------.....)))))..)).-.((((....)))))))))))(((((....(((.....))).)))))))........ ( -32.40) >consensus __________AACGCAGC___G__UCGCGUCCUUC__________GACG____CGUAACG_GACAUUUCUGUGUGCGCUGCGUUUCAAAAAUCUGAUGGAUGGAAAUGCACAAAAUA ..........((((((((..........(((..............)))......((((((.((....))))).))))))))))).........((.((.((....)).))))..... (-13.97 = -14.36 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:53 2006