Locus 6699

Sequence ID 2L_DroMel_CAF1
Location 18,729,908 – 18,730,028
Length 120
Max. P 0.786499
window10696

overview

Window 6

Location 18,729,908 – 18,730,028
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 99.00
Mean single sequence MFE -29.28
Consensus MFE -29.18
Energy contribution -29.22
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.32
Structure conservation index 1.00
SVM decision value 0.57
SVM RNA-class probability 0.786499
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18729908 120 + 22407834
GGUUGCUUUGAUUUUUUGGCGCAAGUCCAAGUCCAAGUGCAUGGACAUACAACACUUCAAAAUGAAAGCACAUUCCCUUGUAGAAAUUUUACCGUUACAGGUACAGCGCACCCCAUGCAC
((.((((((.((((((((((....).))))(((((......)))))............))))).))))))....)).............((((......))))....(((.....))).. ( -28.30)
>DroSec_CAF1 22534 120 + 1
GGCUGCCUUGAUUUUUUGGCGCAAGUCCAAGUCCAAGAGCAUGGACAUACAACACUUCAAAAUGAAAGCACAUUCCCUUGUAGAAAUUUUACCGUUACAGGUACAGCGCACCCCAUGCAC
......((((....((((((....).)))))..)))).((((((...........(((.....))).(((((......)))........((((......))))....))...)))))).. ( -27.20)
>DroSim_CAF1 21030 120 + 1
GGCUGCUUUGAUUUUUUGGCGCAAGUCCAAGUCCAAGAGCAUGGACAUACAACACUUCAAAAUGAAAGCACAUUCCCUUGUAGAAAUUUUACCGUUACAGGUACAGCGCACCCCAUGCAC
.((((((((.((((((((((....).))))(((((......)))))............))))).)))))(((......)))........((((......)))).)))(((.....))).. ( -30.30)
>DroEre_CAF1 22767 120 + 1
GGCUGCUUUGAUUUUUUGGCGCAAGUCCAAGUCCAAGAGCAUGGACAUACAACACUUCAAAAUGAAAGCACAUUCCCUUGUAGAAAUUUUACCGUUACAGGUACAGCGCACCCCAUGCAC
.((((((((.((((((((((....).))))(((((......)))))............))))).)))))(((......)))........((((......)))).)))(((.....))).. ( -30.30)
>DroYak_CAF1 22722 120 + 1
GGCUGCUUUGAUUUUUUGGCGCAAGUCCAAGUCCAAGAGCAUGGACAUACAACACUUCAAAAUGAAAGCACAUUCCCUUGUAGAAAUUUUACCGUUACAGGUACAGCGCACCCCAUGCAC
.((((((((.((((((((((....).))))(((((......)))))............))))).)))))(((......)))........((((......)))).)))(((.....))).. ( -30.30)
>consensus
GGCUGCUUUGAUUUUUUGGCGCAAGUCCAAGUCCAAGAGCAUGGACAUACAACACUUCAAAAUGAAAGCACAUUCCCUUGUAGAAAUUUUACCGUUACAGGUACAGCGCACCCCAUGCAC
.((((((((.((((((((((....).))))(((((......)))))............))))).)))))(((......)))........((((......)))).)))(((.....))).. (-29.18 = -29.22 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:50 2006