Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,729,529 – 18,729,649 |
Length | 120 |
Max. P | 0.980637 |
Location | 18,729,529 – 18,729,649 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.50 |
Mean single sequence MFE | -36.41 |
Consensus MFE | -34.87 |
Energy contribution | -35.27 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.96 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18729529 120 + 22407834 AUUAACAUACGGUCAGAGAAGGGUCUCUGGUCUUAACUUGUGUGUCCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCU ....(((((((..((((((....))))))..).......)))))).......((((((((..((((...((((((.....))))))...))))..)))..(((...)))..))))).... ( -38.41) >DroSec_CAF1 22140 120 + 1 AUUAACAUACGGUCAGAGAAGGGUCUCUGGUCUUAACUUGUGUGUCCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCU ....(((((((..((((((....))))))..).......)))))).......((((((((..((((...((((((.....))))))...))))..)))..(((...)))..))))).... ( -38.41) >DroSim_CAF1 20639 120 + 1 AUUAACAUACGGUCAGAGAAGGGUCUCUGGUCUUAACUUGUGUGUCCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCU ....(((((((..((((((....))))))..).......)))))).......((((((((..((((...((((((.....))))))...))))..)))..(((...)))..))))).... ( -38.41) >DroEre_CAF1 22394 120 + 1 AUUAACAUACGGUCAGAGAAGGGUCUCUAGUCUUAACUUGUGUGUCCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCU ....((((((((..(((((....)))))..)).......)))))).......((((((((..((((...((((((.....))))))...))))..)))..(((...)))..))))).... ( -33.41) >DroYak_CAF1 22352 120 + 1 AUUAACAUACGGUCAGAGAAGGGUCUCUAGUCUUAACUUGUGUGUCCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCU ....((((((((..(((((....)))))..)).......)))))).......((((((((..((((...((((((.....))))))...))))..)))..(((...)))..))))).... ( -33.41) >consensus AUUAACAUACGGUCAGAGAAGGGUCUCUGGUCUUAACUUGUGUGUCCUACUUGGCACGAGACUGGAAUCGGGCAUUUUCAAUGUCCAUGUCCAUGUUCAAGACCAUGUCAUGUGCCUUCU ....(((((((((((((((....))))))).......)))))))).......((((((((..((((...((((((.....))))))...))))..)))..(((...)))..))))).... (-34.87 = -35.27 + 0.40)
Location | 18,729,529 – 18,729,649 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.50 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -33.06 |
Energy contribution | -32.82 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.54 |
Structure conservation index | 1.01 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18729529 120 - 22407834 AGAAGGCACAUGACAUGGUCUUGAACAUGGACAUGGACAUUGAAAAUGCCCGAUUCCAGUCUCGUGCCAAGUAGGACACACAAGUUAAGACCAGAGACCCUUCUCUGACCGUAUGUUAAU ..........((((((((((((((...(((((.((((.((((........)))))))))))..(((((.....)).))).))..))))))))(((((....)))))......)))))).. ( -33.60) >DroSec_CAF1 22140 120 - 1 AGAAGGCACAUGACAUGGUCUUGAACAUGGACAUGGACAUUGAAAAUGCCCGAUUCCAGUCUCGUGCCAAGUAGGACACACAAGUUAAGACCAGAGACCCUUCUCUGACCGUAUGUUAAU ..........((((((((((((((...(((((.((((.((((........)))))))))))..(((((.....)).))).))..))))))))(((((....)))))......)))))).. ( -33.60) >DroSim_CAF1 20639 120 - 1 AGAAGGCACAUGACAUGGUCUUGAACAUGGACAUGGACAUUGAAAAUGCCCGAUUCCAGUCUCGUGCCAAGUAGGACACACAAGUUAAGACCAGAGACCCUUCUCUGACCGUAUGUUAAU ..........((((((((((((((...(((((.((((.((((........)))))))))))..(((((.....)).))).))..))))))))(((((....)))))......)))))).. ( -33.60) >DroEre_CAF1 22394 120 - 1 AGAAGGCACAUGACAUGGUCUUGAACAUGGACAUGGACAUUGAAAAUGCCCGAUUCCAGUCUCGUGCCAAGUAGGACACACAAGUUAAGACUAGAGACCCUUCUCUGACCGUAUGUUAAU ..........((((((((((((((...(((((.((((.((((........)))))))))))..(((((.....)).))).))..)))))))((((((....))))))....))))))).. ( -31.80) >DroYak_CAF1 22352 120 - 1 AGAAGGCACAUGACAUGGUCUUGAACAUGGACAUGGACAUUGAAAAUGCCCGAUUCCAGUCUCGUGCCAAGUAGGACACACAAGUUAAGACUAGAGACCCUUCUCUGACCGUAUGUUAAU ..........((((((((((((((...(((((.((((.((((........)))))))))))..(((((.....)).))).))..)))))))((((((....))))))....))))))).. ( -31.80) >consensus AGAAGGCACAUGACAUGGUCUUGAACAUGGACAUGGACAUUGAAAAUGCCCGAUUCCAGUCUCGUGCCAAGUAGGACACACAAGUUAAGACCAGAGACCCUUCUCUGACCGUAUGUUAAU ..........((((((((((((((...(((((.((((.((((........)))))))))))..(((((.....)).))).))..)))))))((((((....))))))....))))))).. (-33.06 = -32.82 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:49 2006