Locus 6697

Sequence ID 2L_DroMel_CAF1
Location 18,728,733 – 18,728,853
Length 120
Max. P 0.705647
window10693

overview

Window 3

Location 18,728,733 – 18,728,853
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.72
Mean single sequence MFE -35.00
Consensus MFE -30.80
Energy contribution -31.32
Covariance contribution 0.52
Combinations/Pair 1.05
Mean z-score -1.29
Structure conservation index 0.88
SVM decision value 0.36
SVM RNA-class probability 0.705647
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18728733 120 - 22407834
GGCCAGAGCAUCUUUGCAUGUGUUCGUGUAUCUGUGUGAGCACGUUCGCUGGAUCGCUCUACAUUAAGAAAGAAGUGUAUUAGCUUCGAUUUAUUGCAUCGUUGCCUAGGCCCCUGCUUC
(((((((((((((..(((((((((((..(....)..)))))))))..)).)))).)))))...........(((((......)))))........(((....)))...))))........ ( -38.20)
>DroSec_CAF1 21292 115 - 1
GGCCAGAGCAUCUUUGUAUGUGUUCGUGUAUCGGUGUGAGCACGUUCGCUGGAUCACUCUACAUUAAGAAAGAAGUGUAUUAGCUUCGAUUUAUUGCAUCGUUGCCUAGGCCUCU-----
((((((.(((.(...(.(((((((((..(....)..))))))))).)((((((((..(((......)))..(((((......)))))))))))..))...).))))).))))...----- ( -35.20)
>DroSim_CAF1 19770 120 - 1
GGCCAGAGCAUCUUUGCAUGUGUUCGUGUAUCGGUGUGAGCACGUUCGCUGGAUCGCUCUACAUUAAGAAAGAAGUGUAUUAGCUUCGAUUUAUUGCAUCGUUGCCUAGGCCUCUGCCUC
(((((((((((((..(((((((((((..(....)..)))))))))..)).)))).)))))...........(((((......)))))........(((....)))...))))........ ( -38.70)
>DroEre_CAF1 21508 120 - 1
GGCCAGAGCAUCUUUGUAUGUGUCUGUGUAUCUGUGUGAGCACGUUCGCUGGAUCGCUCUACAUUAAGAAAGAAGUGUAUUAGCUUCGAUUUAUUGCAUCGUUGCCUAGGCCUCUGCCUC
(((..(((((((((...(((((...(((.(((((.(((((....)))))))))))))..))))).))))..(((((......))))).......))).))...))).((((....)))). ( -33.90)
>DroYak_CAF1 21477 109 - 1
GGCCAGAGCAUCUUUGUAUGUGUCUGUGUAUCGUUGUGAGCACGUUCGCUUGAACGCUCUACAUUAAGAAAGAAGUGUAUUAGCUUCGAUUUAUUGCAUCGUUGCCUAG-----------
(((..(((((((((...(((((...((((.(((..(((((....))))).)))))))..))))).))))..(((((......))))).......))).))...)))...----------- ( -29.00)
>consensus
GGCCAGAGCAUCUUUGUAUGUGUUCGUGUAUCGGUGUGAGCACGUUCGCUGGAUCGCUCUACAUUAAGAAAGAAGUGUAUUAGCUUCGAUUUAUUGCAUCGUUGCCUAGGCCUCUGC_UC
((((((.(((.(..((((.(((..(((((.((.....)))))))..)))((((((..(((......)))..(((((......))))))))))).))))..).))))).))))........ (-30.80 = -31.32 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:47 2006