Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,727,615 – 18,727,775 |
Length | 160 |
Max. P | 0.902223 |
Location | 18,727,615 – 18,727,735 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -38.28 |
Consensus MFE | -36.70 |
Energy contribution | -37.10 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.96 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18727615 120 - 22407834 GGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGUGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCGAUGUCAACUCCGGGGAGAACAGCUCGCCAAUUAAAACGUA (((.((((((.((((((.((....)).......((.((....((.((..(((...)))...)).))....)).))..))))))))..(((....)))....)))))))............ ( -38.40) >DroSec_CAF1 20179 120 - 1 GGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGUGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCGAUGUCAACUCCGGGGAGAACAGCUCGCCAAUUAAAACGAA (((.((((((.((((((.((....)).......((.((....((.((..(((...)))...)).))....)).))..))))))))..(((....)))....)))))))............ ( -38.40) >DroSim_CAF1 18656 120 - 1 GGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGUGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCGAUGUCAACUCCGGGGAGAACAGCUCGCCAAUUAAAACGAA (((.((((((.((((((.((....)).......((.((....((.((..(((...)))...)).))....)).))..))))))))..(((....)))....)))))))............ ( -38.40) >DroEre_CAF1 20414 120 - 1 GGCUGAGCGAUCGUCGAGAGGAAACUAAAACGACUGGGAAGUGCGGAGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCGAUGUCAACUCCGGGGAGAACAGCUCGCCAAUUAAAACGAA (((.((((..((((((..((....))....)))).........(((((...(((((((((..((((...))))....))))).)))))))))....))...)))))))............ ( -38.50) >DroYak_CAF1 20434 120 - 1 GGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGACAGAUUGAAUCGAAGCGGCUUGGCCGGGGAUCGAUGUCAACUCCGGGGAGAACAGCUCGCCAAUUAAAAAGAA (((.((((..((.(((.(((....(((...(((((....))).))..))).(((((((((..((((...))))....))))).)))))))))).)).....)))))))............ ( -37.70) >consensus GGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGUGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCGAUGUCAACUCCGGGGAGAACAGCUCGCCAAUUAAAACGAA (((.((((((.((((((.((....)).......((.((....((.((..(((...)))...)).))....)).))..))))))))..(((....)))....)))))))............ (-36.70 = -37.10 + 0.40)
Location | 18,727,655 – 18,727,775 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.17 |
Mean single sequence MFE | -32.70 |
Consensus MFE | -29.62 |
Energy contribution | -30.02 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.91 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18727655 120 - 22407834 AUCCAUAAUGAAAUUAUAAAAUUGAAAAGAUUAUAGCCCGGGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGUGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCG ....................................(((.(((..(((....((((..((....))....)))).......(((..(((.......)))..))))))..))).))).... ( -33.30) >DroSec_CAF1 20219 120 - 1 AUCCAUAAUGAAAUUAUAAAAUUGAAAAGAUUAUAGCCCGGGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGUGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCG ....................................(((.(((..(((....((((..((....))....)))).......(((..(((.......)))..))))))..))).))).... ( -33.30) >DroSim_CAF1 18696 120 - 1 AUCCAUAAUGAAAUUAUAAAAUUGAAAAGAUUAUAGCCCGGGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGUGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCG ....................................(((.(((..(((....((((..((....))....)))).......(((..(((.......)))..))))))..))).))).... ( -33.30) >DroEre_CAF1 20454 120 - 1 AUCCAUAAUGAAAUUAUAAAAUUGAAAAGAUUAUAGCCCGGGCUGAGCGAUCGUCGAGAGGAAACUAAAACGACUGGGAAGUGCGGAGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCG ....................................(((.(((..(((....((((..((....))....)))).......(((...((.......))...))))))..))).))).... ( -33.00) >DroYak_CAF1 20474 119 - 1 AUCCAUAAUGAAAUUAUAAAAUUGAAAAGAUUAUAGC-CGGGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGACAGAUUGAAUCGAAGCGGCUUGGCCGGGGAUCG ............................((((...((-(((((((..((((((((...((....))....(((((....))).))))).)))))........)))))))))....)))). ( -30.60) >consensus AUCCAUAAUGAAAUUAUAAAAUUGAAAAGAUUAUAGCCCGGGCUGAGCGAUCGUCGAGAGGAAACUGAAACGACUGGGAAGUGCGGUGAGAUUGGAUCGAAGCGGCUUGGCCGGGGAUCG ............................((((...(.((((((((..((((((((...((....))....(((((....))).))....)))..)))))...)))))))).)...)))). (-29.62 = -30.02 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:41 2006