| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,725,528 – 18,725,724 |
| Length | 196 |
| Max. P | 0.966274 |
| Location | 18,725,528 – 18,725,648 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.17 |
| Mean single sequence MFE | -28.54 |
| Consensus MFE | -27.82 |
| Energy contribution | -28.02 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.668751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18725528 120 + 22407834 UUUAUUUCGUGUUCCUCGCCUAAUGAUCAAAUGGUCUAAUAGUUUAUUUCAUUACUGGGGCUCUGGAACAGGGACUGGCUUCUAUCAACCUGUCUGGCUUUUUGGCCACUCACUAACCUC .......(.((((((..((((...((((....))))...((((..........))))))))...)))))).)(((.((..........)).)))(((((....)))))............ ( -28.90) >DroSec_CAF1 18120 120 + 1 UUUACUUCGUGUUCCUCGCCUAAUGAUCUAAUGGUCUAAUAGUUUAUUUCAUUACUGGGGCUCUGGAACAGGGACUGGCUUCUAUCAACCUGUCUGGCUUUUUGGCCACUCACUAACCUC .......(.((((((..((((...((((....))))...((((..........))))))))...)))))).)(((.((..........)).)))(((((....)))))............ ( -29.10) >DroSim_CAF1 16584 120 + 1 UUUACUUCGUGUUCCUCGCCUAAUGAUCUAAUGGUCUAAUAGUUUAUUUCAUUACUGGGGCUCUGGAACAGGGACUGGCUUCUAUCAACCUGUCUGGCUUUUUGGCCACUCACUAACCUC .......(.((((((..((((...((((....))))...((((..........))))))))...)))))).)(((.((..........)).)))(((((....)))))............ ( -29.10) >DroEre_CAF1 18252 120 + 1 UUUACUGCGUGUUCCUCGCCUAAUGAUCUAAUGGUCUAAUAGUUUAUUUCAUUACUGGGGCUCUGGAACAGGGACUGGCUUCUAUCAACCUGUCUGGCUUUUUGGCCACUCACUAACCUC .......(.((((((..((((...((((....))))...((((..........))))))))...)))))).)(((.((..........)).)))(((((....)))))............ ( -29.20) >DroYak_CAF1 18272 120 + 1 UUAACUGCGUGUUCCUCGCCUAAUGAUCUAAUGGUCUAAUAGUUUAUUUCAUUACUGGGGCUCUGGAACAGGGACUGGCUUCUAUCAACCUGUCUAGCUUUUUGGCCACUCACUAACCUC .......(.((((((..((((...((((....))))...((((..........))))))))...)))))).)((.(((((.......................))))).))......... ( -26.40) >consensus UUUACUUCGUGUUCCUCGCCUAAUGAUCUAAUGGUCUAAUAGUUUAUUUCAUUACUGGGGCUCUGGAACAGGGACUGGCUUCUAUCAACCUGUCUGGCUUUUUGGCCACUCACUAACCUC .......(.((((((..((((...((((....))))...((((..........))))))))...)))))).)(((.((..........)).)))(((((....)))))............ (-27.82 = -28.02 + 0.20)
| Location | 18,725,608 – 18,725,724 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.92 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -25.94 |
| Energy contribution | -25.98 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.966274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18725608 116 - 22407834 -UUUUGGGAGUGCGGUGGCAGAUGGGCGUAAAAGAAGCGCCCGAAAC---AGAAACAACAGAUCAUUAAUUAAACGUUUGGAGGUUAGUGAGUGGCCAAAAAGCCAGACAGGUUGAUAGA -(((((....(((....)))..(((((((.......)))))))...)---)))).((((...(((((((((...........))))))))).((((......)))).....))))..... ( -29.80) >DroSec_CAF1 18200 116 - 1 -UUUUGGGAGUGCGGUGGCAGAUGGGCGUAAAAGAAGCGCCCGAAAC---AGAAACAACAGAUCAUUAAUUAAACGUUUGGAGGUUAGUGAGUGGCCAAAAAGCCAGACAGGUUGAUAGA -(((((....(((....)))..(((((((.......)))))))...)---)))).((((...(((((((((...........))))))))).((((......)))).....))))..... ( -29.80) >DroSim_CAF1 16664 119 - 1 -UUUUGGGAGUGCGGUGGCAGAUGGGCGUAAAAGAAGCGCCCGAAACAGCAGAAACAACAGAUCAUUAAUUAAACGUUUGGAGGUUAGUGAGUGGCCAAAAAGCCAGACAGGUUGAUAGA -(((((....(((....)))..(((((((.......)))))))......))))).((((...(((((((((...........))))))))).((((......)))).....))))..... ( -29.50) >DroEre_CAF1 18332 111 - 1 ------GGAGUGCGGUGGCAGAUGGGCGUAAAAGAAGCGCCCGAAAC---AGAAACAACAGAUCAUUAAUUAAACGUUUGGAGGUUAGUGAGUGGCCAAAAAGCCAGACAGGUUGAUAGA ------.......(((.((...(((((((.......)))))))....---............(((((((((...........))))))))))).)))....((((.....))))...... ( -27.40) >DroYak_CAF1 18352 117 - 1 UUUUUGGGAGUGCGGUGGCAGAUGGGCGUAAAAGAAGAGCCCGAAAC---AGAAACAAGAGAUCAUUAAUUAAACGUUUGGAGGUUAGUGAGUGGCCAAAAAGCUAGACAGGUUGAUAGA ..((((..(((....((((...(((((...........)))))....---.....((.....(((((((((...........))))))))).))))))....)))...))))........ ( -24.50) >consensus _UUUUGGGAGUGCGGUGGCAGAUGGGCGUAAAAGAAGCGCCCGAAAC___AGAAACAACAGAUCAUUAAUUAAACGUUUGGAGGUUAGUGAGUGGCCAAAAAGCCAGACAGGUUGAUAGA .............(((.((...(((((((.......)))))))...................(((((((((...........))))))))))).)))....((((.....))))...... (-25.94 = -25.98 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:36 2006