Locus 6691

Sequence ID 2L_DroMel_CAF1
Location 18,725,029 – 18,725,149
Length 120
Max. P 0.998306
window10679

overview

Window 9

Location 18,725,029 – 18,725,149
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.32
Mean single sequence MFE -29.36
Consensus MFE -27.24
Energy contribution -27.64
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.93
SVM decision value 3.06
SVM RNA-class probability 0.998306
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18725029 120 - 22407834
AGGUGGCGAAAAGAAAUUAUGACACUUGAUCGUUCGGGGGCAGUGAAUAAUUUGUUUACGGCAUUAAAAUGCCAAUUAAAGUGCGAGUUGGCCCGAAAGGAAGUAAAUCGAGUGAAAUGA
................((((..((((((((..(((..((((.((((((.....))))))(((((....))))).................))))....))).....))))))))..)))) ( -28.90)
>DroSec_CAF1 17618 120 - 1
AGGUGGCGAAAAGAAAUUAUGACACUUGAUCGUUCGGGGGCAGUGAAUAAUUUGUUUACGGCAUUAAAAUGCCAAUUAAAGUGCGAGUUGGCCCGAAAGGAAGUAAAUCGAGUGAAAUUA
......................((((((((..(((..((((.((((((.....))))))(((((....))))).................))))....))).....))))))))...... ( -28.40)
>DroSim_CAF1 16111 120 - 1
AGGUGGCGAAAAGAAAUUAUGACACUUGAUCGUUCGGGGGCAGUGAAUAAUUUGUUUACGGCAUUAAAAUGCCAAUUAAAGUGCGAGUUGGCCCGAAAGGAAGUAAAUCGAGUGAAAUGA
................((((..((((((((..(((..((((.((((((.....))))))(((((....))))).................))))....))).....))))))))..)))) ( -28.90)
>DroEre_CAF1 17776 117 - 1
AGGUGGCGAAAAGAAAUUAUGACACUUGAUCGUUCGGGGGCAGUGAAAAAUUUGUUUACGGCAUUAAAAUGCCAAUUAAAGAGCGAGUUGGCCCGAAAGGAAGUAAAUCGAGUGAAA---
......................((((((((((((((..(((((........)))))..)(((((....))))).......))))))......((....)).......)))))))...--- ( -32.10)
>DroYak_CAF1 17834 117 - 1
AGGCGGCGAAGAGAAAUUAUGACACUUGAUCGUUCGGGGGCAGUGAAAAAUUUGUUUACCGCAUUAAAAUGCCAAUUAAAGAGCGAGUUGGCCCGAAAGGAAGUAAAUCGAGUGAAA---
......................(((((((((((((((((((((........)))))).))((((....))))........))))))......((....)).......)))))))...--- ( -28.50)
>consensus
AGGUGGCGAAAAGAAAUUAUGACACUUGAUCGUUCGGGGGCAGUGAAUAAUUUGUUUACGGCAUUAAAAUGCCAAUUAAAGUGCGAGUUGGCCCGAAAGGAAGUAAAUCGAGUGAAAU_A
......................(((((((((.(((((..((.((((((.....)))))).))........(((((((........))))))))))))..))......)))))))...... (-27.24 = -27.64 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:34 2006