Locus 6689

Sequence ID 2L_DroMel_CAF1
Location 18,724,089 – 18,724,209
Length 120
Max. P 0.694999
window10674

overview

Window 4

Location 18,724,089 – 18,724,209
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.67
Mean single sequence MFE -29.02
Consensus MFE -27.00
Energy contribution -27.40
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.93
SVM decision value 0.34
SVM RNA-class probability 0.694999
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18724089 120 - 22407834
GACUUGCACCAAAUCCAAGACCGUAGACAACUCAAUAAAAGAGUUUUACAUAGAUGCCUCGCCCUGACUUAUGUAAGGCGCAAUUUGCAAUGCAACAAUUUGCAAAUGCGGCCCAGGAGA
.............(((......(((((..((((.......)))))))))......(((..(((...((....))..)))(((.(((((((.........)))))))))))))...))).. ( -29.10)
>DroSec_CAF1 16707 120 - 1
GACUUGCACCAAAUCCAAGACCGUAGACAACUCAAUAACAGAGUUUUACAUAGAUGCCUCGCCCUGACUUAUGUAAGGCGCAAUUUGCAAUGCAACAAUUUGCAAAUGCGGCCCAGGAGA
.............(((......(((((..((((.......)))))))))......(((..(((...((....))..)))(((.(((((((.........)))))))))))))...))).. ( -29.10)
>DroSim_CAF1 15195 120 - 1
GACUUGCACCAAAUCCAAGACCGUAGACAACUCAAUAACAGAGUUUUACAUAGAUGCCUCGCCCUGACUUAUGUAAGGCGCAAUUUGCAAUGCAACAAUUUGCAAAUGCGGCCCAGGAGA
.............(((......(((((..((((.......)))))))))......(((..(((...((....))..)))(((.(((((((.........)))))))))))))...))).. ( -29.10)
>DroEre_CAF1 16877 119 - 1
GACUUGCACCAAAUCCAAGACCGUAGACAACUCAAUAACAGAGUUUUACAUAGAUGCCUCGCCCUGACUUAUGUAAGGCGCAAUUUGCAAUGCAACAAUUUGCA-AUGCGGCCCAGGAGA
.............(((......(((((..((((.......)))))))))......(((..(((((.((....)).))).)).....(((.(((((....)))))-.))))))...))).. ( -29.70)
>DroYak_CAF1 16924 120 - 1
GAGUUGCACCAAAUCCAAGACCGUAGACAACUCAAUAACAGAGUUUUACAUAGAUGCCUCGCCCUGACUUAUGUAAGUCGCAAUUUGCAAUGCAACAAUUUGCAAAUGCGGCCCAGGAGA
(((..(((.(...((...))..(((((..((((.......)))))))))...).))))))..((((((....))..((((((.(((((((.........))))))))))))).))))... ( -28.10)
>consensus
GACUUGCACCAAAUCCAAGACCGUAGACAACUCAAUAACAGAGUUUUACAUAGAUGCCUCGCCCUGACUUAUGUAAGGCGCAAUUUGCAAUGCAACAAUUUGCAAAUGCGGCCCAGGAGA
.............(((......(((((..((((.......)))))))))......(((..(((...((....))..)))(((.(((((((.........)))))))))))))...))).. (-27.00 = -27.40 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:29 2006