Locus 6686

Sequence ID 2L_DroMel_CAF1
Location 18,723,137 – 18,723,257
Length 120
Max. P 0.952600
window10669

overview

Window 9

Location 18,723,137 – 18,723,257
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.33
Mean single sequence MFE -18.16
Consensus MFE -17.62
Energy contribution -17.62
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.97
SVM decision value 1.42
SVM RNA-class probability 0.952600
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18723137 120 - 22407834
AAUCUACUUAAACAACUUAAUGAUUACCCCACCCAUUUGCAGCAACAGCAACGCAUAUUUUGAAAGCAAAAGUAAAGUGUUUUGAAAGUAAACUACACUAAUUUAAAGCUGUAAAUUAAC
..................................(((((((((....((...)).((((((.((((((.........)))))).)))))).................))))))))).... ( -17.80)
>DroSec_CAF1 15769 120 - 1
AAUCUACUUAAACAACUUAAUGAUUACCCCACCCAUUUGCAGCAACAGCAACGCAUAUUUUGAAAGCAAAAGUAAAGUGUUUUGAAAGUAAACUACACUAAUUUAAAGCUGUAAAUUAAC
..................................(((((((((....((...)).((((((.((((((.........)))))).)))))).................))))))))).... ( -17.80)
>DroSim_CAF1 14257 120 - 1
AAUCUACUUAAACAACUUAAUGAUUACCCCACCCAUUUGCAGCAACAGCAACGCAUAUUUUGAAAGCAAAAGUAAAGUGUUUUGAAAGUAAACUACACUAAUUUAAAGCUGUAAAUUAAC
..................................(((((((((....((...)).((((((.((((((.........)))))).)))))).................))))))))).... ( -17.80)
>DroEre_CAF1 15900 120 - 1
AAUCUACUUAAACAGCUUAAUGAUUACCCCACCCAUUUGCAGCCACAGCAACGCAUAUUUUGAAAGCAAAAGUAAAGUGUUUUGAAAGUAAACUACACUAAUUUAAAGCUGUAAAUUAAC
...........(((((((...(((((..........((((.......))))....((((((.((((((.........)))))).))))))........)))))..)))))))........ ( -19.60)
>DroYak_CAF1 15956 120 - 1
AAUCUACUUAAACAACUUAAUGAUUACCCCACCCAUUUGCAGCAACAGCAACGCAUAUUUUGAAAGCAAAAGUAAAGUGUUUUGAAAGUAAACUACACUAAUUUAAAGCUGUAAAUUAAC
..................................(((((((((....((...)).((((((.((((((.........)))))).)))))).................))))))))).... ( -17.80)
>consensus
AAUCUACUUAAACAACUUAAUGAUUACCCCACCCAUUUGCAGCAACAGCAACGCAUAUUUUGAAAGCAAAAGUAAAGUGUUUUGAAAGUAAACUACACUAAUUUAAAGCUGUAAAUUAAC
..................................(((((((((....((...)).((((((.((((((.........)))))).)))))).................))))))))).... (-17.62 = -17.62 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:24 2006