Locus 6681

Sequence ID 2L_DroMel_CAF1
Location 18,717,939 – 18,718,050
Length 111
Max. P 0.555469
window10659

overview

Window 9

Location 18,717,939 – 18,718,050
Length 111
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 90.87
Mean single sequence MFE -26.90
Consensus MFE -23.84
Energy contribution -23.52
Covariance contribution -0.31
Combinations/Pair 1.12
Mean z-score -1.35
Structure conservation index 0.89
SVM decision value 0.04
SVM RNA-class probability 0.555469
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18717939 111 - 22407834
CGUUUGUCCGUCAUUUACAAAUGAUCCGGUGCGAAAGAGAGGCUCCAAGCUUAGAGGGACAUAAAAUUGCCCAAGACUGGCUAAACUAAACUGAUU-UUGCAUCUAAAAAAA
(((((((.........)))))))....(((((((((.((((((.....))))...(((.((......)))))..................))..))-)))))))........ ( -23.50)
>DroSec_CAF1 10699 105 - 1
CGUUUGUCCGUCAUUUACAAAUGAUCCGGUGCGAAAGAGAGGCUCC-AGCUUAGAGGGACAUAAAAUUGCCCAAGACUGGCAAAGCUAAACUUAUUUUUGCACCU-----A-
(((((((.........)))))))....((((((((((.((((((((-(((((...(((.((......)))))))).))))...)))....))).)))))))))).-----.- ( -31.50)
>DroSim_CAF1 9124 111 - 1
CGUUUGUCCGUCAUUUACAAAUGAUCCGGUGCGAAAGAGAGGCUCCAAGCUUAGAGGGACAUAAAAUUGCCCAAGACUGGCUAAACUAAACUGAUUUUUGCACCUCAAAAA-
(((((((.........)))))))....((((((((((..((((.....))))...(((.((......)))))......................)))))))))).......- ( -25.90)
>DroYak_CAF1 10839 109 - 1
CGUUUGCCCGUCAUUUACAAAUGAUCCGGUGUGAAAGAGAAGCUCG-AGCUUAGAGGGACAUGAAAUUGCCCAAGACUAGCUAAGCUAAACUGAUUUUUGCACCUAAAAA--
.........((((((....))))))..((((..((((...((....-(((((((.(((.((......)))))........)))))))...))..))))..))))......-- ( -26.70)
>consensus
CGUUUGUCCGUCAUUUACAAAUGAUCCGGUGCGAAAGAGAGGCUCC_AGCUUAGAGGGACAUAAAAUUGCCCAAGACUGGCUAAACUAAACUGAUUUUUGCACCUAAAAAA_
((((((...........))))))....((((((((((..((((.....))))...(((.((......)))))......................))))))))))........ (-23.84 = -23.52 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:15 2006