Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,717,740 – 18,717,860 |
Length | 120 |
Max. P | 0.999472 |
Location | 18,717,740 – 18,717,860 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -29.79 |
Consensus MFE | -29.95 |
Energy contribution | -29.79 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -2.34 |
Structure conservation index | 1.01 |
SVM decision value | 3.63 |
SVM RNA-class probability | 0.999472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18717740 120 + 22407834 UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCUCUGGCUAA ..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -30.09) >DroSec_CAF1 10508 120 + 1 UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCUCUGGCUAA ..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -30.09) >DroSim_CAF1 8932 120 + 1 UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGAUCAACCAGUUAACUCAGCUCUGGCUAA ..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -28.59) >DroEre_CAF1 10657 120 + 1 UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUAUUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCGCUGGCUAA ..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -30.09) >DroYak_CAF1 10661 120 + 1 UCGCCGCUGGCUGACUGUAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCUCUGGCUAA ..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -30.09) >consensus UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCUCUGGCUAA ..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... (-29.95 = -29.79 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:14 2006