Locus 6679

Sequence ID 2L_DroMel_CAF1
Location 18,717,518 – 18,717,626
Length 108
Max. P 0.867902
window10657

overview

Window 7

Location 18,717,518 – 18,717,626
Length 108
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 89.59
Mean single sequence MFE -37.20
Consensus MFE -28.27
Energy contribution -28.27
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.76
SVM decision value 0.86
SVM RNA-class probability 0.867902
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18717518 108 + 22407834
AGGCAACUUGAGCAGCCAG----CCAGCCGGUCGGUUGGUCGGUCGUUGGUC----UGCCAAAUGAAUGAAUGUCGAAAAGUGUAUCGAAAAGCAUUUUUCUACGUAUGCCAGCCA
.((((..(((.((((((((----(..((((..(....)..)))).))))).)----))))))........((((.(((((((((........))))))))).)))).))))..... ( -41.10)
>DroSim_CAF1 8706 116 + 1
AGGCAACUUGAGCAGCCAGCCAGCCAGCCGGUCGGUUGGUCGGUCGUUGGUCCGUCCGCCAAAUGAAUGAAUGUCGAAAAGUGUAUCGAAAAGCAUUUUUCUACGUAUGCCAGCCA
.((((....((.(.(((((((.(((....))).))))))).).)).(((((......)))))........((((.(((((((((........))))))))).)))).))))..... ( -40.20)
>DroEre_CAF1 10450 99 + 1
AGGCAACUUGAGCAGCC--------AGCCGGUCGGUCGGUCGGUCGUUGGUC----UGCCAAAUGAAUGAAUGUCGAAAAGUGUAUCGAAAAGCAUUUUUCUACGUAUGCC-----
.((((..(((.((((((--------(((.(..(((....)))..)))))).)----))))))........((((.(((((((((........))))))))).)))).))))----- ( -36.00)
>DroYak_CAF1 10471 98 + 1
AGGCAACUUGAGCAGCC--------AGCCGGUCGGU-GGUCGGUCGUUGGUC----CGCCAAAUGAAUGAAUGUCGAAAAGUGUAUCGAAAAGCAUUUUUCUACGUAUGCC-----
.((((..(((.((.(((--------(((.(..((..-...))..))))))).----.)))))........((((.(((((((((........))))))))).)))).))))----- ( -31.50)
>consensus
AGGCAACUUGAGCAGCC________AGCCGGUCGGUUGGUCGGUCGUUGGUC____CGCCAAAUGAAUGAAUGUCGAAAAGUGUAUCGAAAAGCAUUUUUCUACGUAUGCC_____
.((((.....................((((..(....)..))))..(((((......)))))........((((.(((((((((........))))))))).)))).))))..... (-28.27 = -28.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:13 2006