| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,716,249 – 18,716,345 |
| Length | 96 |
| Max. P | 0.898188 |
| Location | 18,716,249 – 18,716,345 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 87.42 |
| Mean single sequence MFE | -23.83 |
| Consensus MFE | -20.48 |
| Energy contribution | -21.82 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18716249 96 + 22407834 AUCGCAGCAUCAACAACAACUGCACA-CAGCAACUUGCAACUGGCAGUGGCCACAACAACAAAU------AUUCGCUGCCAGGAUAGCGGCUAACACACACUC ...((((............))))...-.(((..((.....((((((((((..............------..))))))))))...))..)))........... ( -24.29) >DroSec_CAF1 9090 93 + 1 ---GCAGCAUCAGCAACAACUGCACA-CAGCAACUUGCAACUGGCAGUGGCGACAACAACAAAU------AUUCGCUGCCAGGAUAGCGGCUCACACACACUC ---((.(((((.((((....(((...-..)))..))))..((((((((((..............------..))))))))))))).)).))............ ( -27.29) >DroYak_CAF1 9075 102 + 1 AUCGCAGCAUCAGCAACAACUGCACACCAGCAACUUGCAGCUCGCAGUG-CGACGACAACAAAAACAAAUAUUCGCUGGCAGGAUAGCGGCUCACACACACUC .((((.((....))....(((((.....(((........))).))))))-)))...................((((((......))))))............. ( -19.90) >consensus AUCGCAGCAUCAGCAACAACUGCACA_CAGCAACUUGCAACUGGCAGUGGCGACAACAACAAAU______AUUCGCUGCCAGGAUAGCGGCUCACACACACUC ...((.(((((.((((....(((......)))..))))..((((((((((......................))))))))))))).)).))............ (-20.48 = -21.82 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:08 2006