Locus 6673

Sequence ID 2L_DroMel_CAF1
Location 18,713,822 – 18,713,941
Length 119
Max. P 0.791338
window10642

overview

Window 2

Location 18,713,822 – 18,713,941
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.08
Mean single sequence MFE -40.02
Consensus MFE -30.81
Energy contribution -33.62
Covariance contribution 2.81
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.77
SVM decision value 0.59
SVM RNA-class probability 0.791338
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18713822 119 - 22407834
GUUGCUGUUGCCGUUGAGUUCGGUUCACAUGAUGAGCCGUGGAGUUGGGGAUCUCUUUAAGGUCUAUUCUUGGCGUGCCAUCUGCCCAGAGUCGAGCUUCAGCUAAUGCACAGCAA-AAA
.(((((((.((.((((((((((..((....((((.(((((.(((....((((((.....))))))...))).))).))))))......))..))))).)))))....)))))))))-... ( -46.40)
>DroSec_CAF1 6739 118 - 1
GUUGCUGUUGCCGUUGAGCUCGGUUCACAUGAUGAGCCGUGGAGUUGGGGAUCUCUUUAAGGUCUAUUCUUGGCGUGCCAUCUGCCCAGAGUCGAGCUUCAGCUUAUGCACAGCAC-AA-
..((((((.((.((((((((((..((....((((.(((((.(((....((((((.....))))))...))).))).))))))......))..))))).)))))....)))))))).-..- ( -47.60)
>DroEre_CAF1 6607 118 - 1
-UUGCGGUUGCCGUUGAGCUCAGUUCACAUGAUGAGCUGUGGAGUUGGGGAUCUCUUUAAGGUCUAUUCUUGGCGUGCCAUCUGCCCAGAGUCGAGCUUCAGUUUAUGCACAGCACUAA-
-.(((...(((...(((((.(((((((.....)))))))(((((((.(((((((.....))))))(((((.((((.......)))).)))))).)))))))))))).)))..)))....- ( -36.60)
>DroYak_CAF1 6724 100 - 1
-UUGCGG----------------UUCACAUGAUGAACUGUGGAGUUGGGGAUCUCUUUAAGGUCUAUUCUUGGCGUGCCAUCUGCCCAGAGUCGAGCUUCAGUUUAUGCACAGCA--AA-
-((((((----------------((((.....)))))).(((((((.(((((((.....))))))(((((.((((.......)))).)))))).)))))))...........)))--).- ( -29.50)
>consensus
_UUGCGGUUGCCGUUGAGCUCGGUUCACAUGAUGAGCCGUGGAGUUGGGGAUCUCUUUAAGGUCUAUUCUUGGCGUGCCAUCUGCCCAGAGUCGAGCUUCAGCUUAUGCACAGCAC_AA_
..((((((.((...(((((.(((((((.....)))))))(((((((.(((((((.....))))))(((((.((((.......)))).)))))).)))))))))))).))))))))..... (-30.81 = -33.62 +   2.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:59 2006