Locus 6672

Sequence ID 2L_DroMel_CAF1
Location 18,712,133 – 18,712,253
Length 120
Max. P 0.749055
window10641

overview

Window 1

Location 18,712,133 – 18,712,253
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.12
Mean single sequence MFE -35.64
Consensus MFE -29.93
Energy contribution -32.00
Covariance contribution 2.06
Combinations/Pair 1.03
Mean z-score -2.00
Structure conservation index 0.84
SVM decision value 0.47
SVM RNA-class probability 0.749055
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18712133 120 - 22407834
GUCGGUGGCGGCCACAUCCUCGUCAUCAACGUCGCCGACGACGACGUCGGCAACGACAACUGGGCGGCUGCAGCACCAACACUCCCACCAGCAACACCAGACCUUAAAUCACCAUGCCAA
(((((((((((........))))))))...((.(((((((....))))))).)))))..(((((..((((..................))))..).)))).................... ( -38.37)
>DroSec_CAF1 5104 120 - 1
GGCGGUGGCGGCAACAUCCUCGUCAUCAACGUCGCCGACGACGACGUCGGCAACGACAACUGGGCGGCUGCAGCACCAACACUCCCACCAGCAACACCAGACCUUAAAUCACCAUGCCAA
(((((((((((........))))))))..(((.(((((((....))))))).)))....(((((..((((..................))))..).))))...............))).. ( -41.77)
>DroEre_CAF1 4965 117 - 1
GGC---GGCGGCCACAUCCUCGUCAUCAUCGUCGCCGACGACGACGUCAGCAACGACAACUGGGCGGCUGCAGCACCAACACUCCCACCAGCAACACCAGACCAUAAAUCACCAUGCCAA
(((---(((((........)))))....((((.((.((((....)))).)).))))...(((((..((((..................))))..).))))...............))).. ( -31.77)
>DroYak_CAF1 4937 117 - 1
GGC---GGCGGCCACAUCCUCGUCAUCAUCGUCGCCGACGACCACGUCAGCAAUGACAACUGGGCGGCUGCAGCACCAACACUCCCACCAGCAACACCAGACCUUAAAUCACCAUGCCAA
(((---((((((..................))))))...((....((((....))))..(((((..((((..................))))..).))))........)).....))).. ( -30.64)
>consensus
GGC___GGCGGCCACAUCCUCGUCAUCAACGUCGCCGACGACGACGUCAGCAACGACAACUGGGCGGCUGCAGCACCAACACUCCCACCAGCAACACCAGACCUUAAAUCACCAUGCCAA
(((((((((((........))))))))..(((.(((((((....))))))).)))....(((((..((((..................))))..).))))...............))).. (-29.93 = -32.00 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:58 2006