Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,966,242 – 1,966,374 |
Length | 132 |
Max. P | 0.966759 |
Location | 1,966,242 – 1,966,335 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 92.15 |
Mean single sequence MFE | -28.58 |
Consensus MFE | -21.92 |
Energy contribution | -23.72 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.77 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.828018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1966242 93 + 22407834 CCGCCAUUUUGUUUCGCCGGGUUGCGCCUUCAAAUGUGCAACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAU ((((......(..((((..((((((((........))))))))...))))..)..)))).........(((((((....)))))))....... ( -32.30) >DroSec_CAF1 8713 93 + 1 CCGCCAUUUUGUUUCGUCGGGUUGCGCCUUCAAAUGUGCAACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAU ((((......(..((((..((((((((........))))))))...))))..)..)))).........(((((((....)))))))....... ( -30.70) >DroSim_CAF1 12859 93 + 1 CCGCCAUUUUGUUUCGUCGGGUUGCGCCUUCAAAUGUGCAACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAU ((((......(..((((..((((((((........))))))))...))))..)..)))).........(((((((....)))))))....... ( -30.70) >DroEre_CAF1 17833 83 + 1 CCGCCAUUUUGUCAC----------GCCUUCAAAAGUGCAACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAU ((((..(((((....----------.....))))).((.((((.....)))).)))))).........(((((((....)))))))....... ( -20.20) >DroYak_CAF1 15768 93 + 1 CCGCCAUUUUGUCUCGCCGCGUUGCGCCUUCAAAUGUGCAACCAUCGCGCUUCCAGCGGCCCCAACCUAGACCCCAAGUUGGGGUUUAAAAAU ..(((..........((...(((((((........)))))))....))((.....))))).......((((((((.....))))))))..... ( -29.00) >consensus CCGCCAUUUUGUUUCGCCGGGUUGCGCCUUCAAAUGUGCAACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAU ..(((..............((((((((........))))))))...((.......)))))........(((((((....)))))))....... (-21.92 = -23.72 + 1.80)
Location | 1,966,281 – 1,966,374 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 97.85 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -23.92 |
Energy contribution | -24.52 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.86 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1966281 93 + 22407834 AACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAUAAAUUCCCCAUUUGCGACUGGUAAUUUGCCGACUGUCUG ((((.....)))).(((((((......((((..(.(((((((((.((((....))))..))))))))).).))))......)))).))).... ( -28.30) >DroSec_CAF1 8752 93 + 1 AACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAUAAAUUCCCCAUUUGCGACUGGUAAUUUGCCGACUGUCUG ((((.....)))).(((((((......((((..(.(((((((((.((((....))))..))))))))).).))))......)))).))).... ( -28.30) >DroSim_CAF1 12898 93 + 1 AACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAUAAAUUCCCCAUUUGCGACUGGUAAUUUGCCGACUGUCUG ((((.....)))).(((((((......((((..(.(((((((((.((((....))))..))))))))).).))))......)))).))).... ( -28.30) >DroEre_CAF1 17862 92 + 1 AACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAUAAAU-CCCCAUUUGCGACUGGUAAUUUGCCGACUGUCUG ((((.....)))).(((((((......((((..(.(((((((((.((((....)))).-))))))))).).))))......)))).))).... ( -29.30) >DroYak_CAF1 15807 93 + 1 AACCAUCGCGCUUCCAGCGGCCCCAACCUAGACCCCAAGUUGGGGUUUAAAAAUAAAUUCCCCAUUUGCGAGUGGUAAUUUGCCGACUGUCUG ..............(((((((.......((((((((.....)))))))).....(((((..(((((....))))).))))))))).))).... ( -25.40) >consensus AACCAUCGCGGUUCCAGCGGCCCCAACCUAGACCCCAAGUGGGGUUUUAAAAAUAAAUUCCCCAUUUGCGACUGGUAAUUUGCCGACUGUCUG ((((.....)))).(((((((......((((....(((((((((..((.......))..)))))))))...))))......)))).))).... (-23.92 = -24.52 + 0.60)
Location | 1,966,281 – 1,966,374 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 97.85 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -27.06 |
Energy contribution | -27.66 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.87 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1966281 93 - 22407834 CAGACAGUCGGCAAAUUACCAGUCGCAAAUGGGGAAUUUAUUUUUAAAACCCCACUUGGGGUCUAGGUUGGGGCCGCUGGAACCGCGAUGGUU ....(((.((((.....(((((((.(((.(((((..((((....)))).))))).))).)).)).)))....))))))).((((.....)))) ( -31.20) >DroSec_CAF1 8752 93 - 1 CAGACAGUCGGCAAAUUACCAGUCGCAAAUGGGGAAUUUAUUUUUAAAACCCCACUUGGGGUCUAGGUUGGGGCCGCUGGAACCGCGAUGGUU ....(((.((((.....(((((((.(((.(((((..((((....)))).))))).))).)).)).)))....))))))).((((.....)))) ( -31.20) >DroSim_CAF1 12898 93 - 1 CAGACAGUCGGCAAAUUACCAGUCGCAAAUGGGGAAUUUAUUUUUAAAACCCCACUUGGGGUCUAGGUUGGGGCCGCUGGAACCGCGAUGGUU ....(((.((((.....(((((((.(((.(((((..((((....)))).))))).))).)).)).)))....))))))).((((.....)))) ( -31.20) >DroEre_CAF1 17862 92 - 1 CAGACAGUCGGCAAAUUACCAGUCGCAAAUGGGG-AUUUAUUUUUAAAACCCCACUUGGGGUCUAGGUUGGGGCCGCUGGAACCGCGAUGGUU ....(((.((((.....(((((((.(((.(((((-.((((....)))).))))).))).)).)).)))....))))))).((((.....)))) ( -33.30) >DroYak_CAF1 15807 93 - 1 CAGACAGUCGGCAAAUUACCACUCGCAAAUGGGGAAUUUAUUUUUAAACCCCAACUUGGGGUCUAGGUUGGGGCCGCUGGAAGCGCGAUGGUU .................((((.((((.....((...((((....))))(((((((((((...)))))))))))))((.....)))))))))). ( -28.70) >consensus CAGACAGUCGGCAAAUUACCAGUCGCAAAUGGGGAAUUUAUUUUUAAAACCCCACUUGGGGUCUAGGUUGGGGCCGCUGGAACCGCGAUGGUU ....(((.((((.....(((((((.(((.(((((..((((....)))).))))).))).)).)).)))....))))))).((((.....)))) (-27.06 = -27.66 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:26 2006