Locus 6668

Sequence ID 2L_DroMel_CAF1
Location 18,709,528 – 18,709,648
Length 120
Max. P 0.835942
window10633

overview

Window 3

Location 18,709,528 – 18,709,648
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.14
Mean single sequence MFE -34.16
Consensus MFE -28.76
Energy contribution -29.60
Covariance contribution 0.84
Combinations/Pair 1.03
Mean z-score -1.55
Structure conservation index 0.84
SVM decision value 0.73
SVM RNA-class probability 0.835942
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18709528 120 + 22407834
UUGUCGGAAAUUUGGGGCAAUUUCACUCGAACGCGUAGAUCUGCGUUUUAAUUUUAAUUGAAUUGAAUUAGGCUGCAGUGGCCCACGGCUACGAUUUAUAGUGAGAGCGAGAGCUCAACU
..............((((..((((.(((..((..(((((((((((.((((((((..........)))))))).))))((((((...))))))))))))).))..))).)))))))).... ( -35.10)
>DroSec_CAF1 2457 120 + 1
UUGUCGGAAAUUUGGGGCAAUUUCACUCGAACGCGUAGAUCUGCGUUUUAAUUUUAAUUGAAUUGAAUUAGGCUGCAGUGGCCCACGGCUACGAUUUAUAGUGAGAGCGAGAGCUCAACU
..............((((..((((.(((..((..(((((((((((.((((((((..........)))))))).))))((((((...))))))))))))).))..))).)))))))).... ( -35.10)
>DroSim_CAF1 2346 120 + 1
UUGUCGGAAAUUUGGGGCAAUUUCACUCGAACGCGUAGAUCUGCGUUUUAAUUUUAAUUGAAUUGAAUUAGGCUGCAGUGGCCCACGGCUACGAUUUAUAGUGAGAGCGAGAGCUCAACU
..............((((..((((.(((..((..(((((((((((.((((((((..........)))))))).))))((((((...))))))))))))).))..))).)))))))).... ( -35.10)
>DroEre_CAF1 2340 115 + 1
UUGUCGGAAAUUUGGGGCAAUUUCUCUCGAACGCGUAGAUCUGCGUUUUAAUUUUAAUU-----GAAUUAGGCUGCAGUGGCCCACGGCUACGAUUUAUAGAGAGAGAGAGAGCUCAACU
..............((((..((((((((...(..(((((((((((.((((((((.....-----)))))))).))))((((((...))))))))))))).).))))))))..)))).... ( -38.80)
>DroYak_CAF1 2292 113 + 1
UUGUCGGAAAUUCGGGGCAAUUUCACUCGAACACGUAAAUCUGCGUUUUAAUUUUAAUU-----GAAUUAGGCUGCAGUGGCCCACGACUACGAUUUAUAGAGAG--AGAGAGCUCAACU
..............((((..((((.(((......(((((((((((.((((((((.....-----)))))))).))))((((.......))))))))))).))).)--)))..)))).... ( -26.70)
>consensus
UUGUCGGAAAUUUGGGGCAAUUUCACUCGAACGCGUAGAUCUGCGUUUUAAUUUUAAUUGAAUUGAAUUAGGCUGCAGUGGCCCACGGCUACGAUUUAUAGUGAGAGCGAGAGCUCAACU
..............((((..((((.(((...((((((((((((((.((((((((..........)))))))).))))((((((...))))))))))))).))).))).)))))))).... (-28.76 = -29.60 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:51 2006