Locus 6665

Sequence ID 2L_DroMel_CAF1
Location 18,697,213 – 18,697,308
Length 95
Max. P 0.551866
window10628

overview

Window 8

Location 18,697,213 – 18,697,308
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 90.99
Mean single sequence MFE -15.99
Consensus MFE -12.06
Energy contribution -12.86
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.75
SVM decision value 0.04
SVM RNA-class probability 0.551866
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18697213 95 - 22407834
GAAUAUAAGUAAUAUAAUC-CAUUUUCUAAAAGAUUAUUGAACGUACGCAAUCGUUUAAUGUGAUACAACGAAAAUAAGGUAUUACAAGAUGAUAG
........(((((((....-.((((((........(((((((((........))))))))).........))))))...))))))).......... ( -15.83)
>DroSec_CAF1 2315 95 - 1
GAAUAUAGGAGAAAUAUUC-CAUUUUCUAAAAGAUUAUUGAACGUACGCAAUCGUUUAAUGUGAUACAACGAAAAUAAGGUAUUACAAGAUGAUAG
((((((.......))))))-((((((..........((((((((........))))))))(((((((............))))))))))))).... ( -16.50)
>DroSim_CAF1 2337 95 - 1
GAAUAUAAGUGAAAUAUUC-CAUUUUCUAAAAGAUUAUUGAACGUACGCAAUCGUUUAAUGUGAUACAACGAAAAUAAGGUAUUACAAGAUGAUAG
((((((.......))))))-((((((..........((((((((........))))))))(((((((............))))))))))))).... ( -16.50)
>DroEre_CAF1 2236 94 - 1
GAAUAAAAGGGAAAUAUUC-CAUUUGCUAAAAUAUUAUUGAACGUGCGCAAACGUUUAACGUGAUACAACGAAAAUAUGGUAUUACAA-AUGACAG
(((((.........)))))-((((((....(((((((((((((((......))))))))(((......)))......))))))).)))-))).... ( -16.30)
>DroYak_CAF1 2257 96 - 1
GAAUAAAAAAGAAAUAUUCCCAUAUUCUAAAAUAUUAUUGAACGUGCGCAAACGUUUAAUGUGAUACAACGAAAAUAAGGUAUUACAAAAUGAAAG
(((((.........))))).(((.............(((((((((......)))))))))(((((((............)))))))...))).... ( -14.80)
>consensus
GAAUAUAAGAGAAAUAUUC_CAUUUUCUAAAAGAUUAUUGAACGUACGCAAUCGUUUAAUGUGAUACAACGAAAAUAAGGUAUUACAAGAUGAUAG
....................((((((..........((((((((........))))))))(((((((............))))))))))))).... (-12.06 = -12.86 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:46 2006