| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,696,279 – 18,696,391 |
| Length | 112 |
| Max. P | 0.860531 |
| Location | 18,696,279 – 18,696,391 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.05 |
| Mean single sequence MFE | -25.36 |
| Consensus MFE | -17.42 |
| Energy contribution | -17.31 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.860531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18696279 112 + 22407834 UCCAAGCUACAAUCCGGGCAGCUGGCACUCCAACUACUACCAGAACUAUCACCAGGCAGCGGCUAACUUUAACAUGGCUCAGCAGCAUCCUGGCAUGCCCUUCCCAGUGCC--U .....((........(((((.((((..............))))........(((((..((.(((..((.......))...))).))..)))))..)))))........)).--. ( -25.63) >DroVir_CAF1 1426 103 + 1 UCCCAGCUACAAUCCGGGCAGCUGGCACUCCAACUAUUAUCACAAUUAUCAUCCGCCGGCGGCCAAUUUCAAUAUGAUG---------CCAGGCAUGCCGUUUCCCAUGCC--C ................(((.((((((............................)))))).)))...............---------...((((((........))))))--. ( -23.59) >DroPse_CAF1 1390 108 + 1 UCCUAGCUAUAAUCCCGGCAGCUGGCACUCGAAUUACUAUCACAAUUAUCAUCAGCCGGCGGCCAAUUUUAAUAUGCCGC------AGCCGGGCAUACCUUAUCCAAUGCCGCC .....((........((((.((((((.....((((........)))).......))))))(((............)))..------.))))(((((..........))))))). ( -27.50) >DroGri_CAF1 1081 103 + 1 UCCCAGCUAUAAUCCUGGUAGCUGGCACUCCAACUACUAUCACAAUUAUCAUCCGCCGGCGGCCAACUUUAAUAUGAUG---------CCUGGCAUGGCGUUUCCCAUGCC--C ..((((((((.......)))))))).....................(((((((((....)))...........))))))---------...(((((((......)))))))--. ( -27.40) >DroAna_CAF1 1322 109 + 1 CCCCAGCUACAAUCCUGGCAGCUGGCAUUCCAACUAUUACCACAACUACCACCAGCCGCCGACCAAUUUCAAUAUGCCACC---CCACCCAGGCAUGCAUUUUCCAGUGCC--C .....((.((.....((((.(((((..........................))))).))))...........((((((...---.......)))))).........)))).--. ( -20.97) >DroPer_CAF1 1385 108 + 1 UCCUAGCUAUAAUCCCGGCAGCUGGCACUCGAACUACUAUCACAAUUAUCAUCAGCCGGCGGCCAAUUUUAAUAUGCCGC------AGCCGGGCAUACCUUAUCCAAUGCCGCC .....((........((((.((((((............................))))))(((............)))..------.))))(((((..........))))))). ( -27.09) >consensus UCCCAGCUACAAUCCCGGCAGCUGGCACUCCAACUACUAUCACAAUUAUCAUCAGCCGGCGGCCAAUUUUAAUAUGCCGC______A_CCAGGCAUGCCUUUUCCAAUGCC__C ................(((.((((((............................)))))).)))...........................(((((..........)))))... (-17.42 = -17.31 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:45 2006