Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,693,711 – 18,693,804 |
Length | 93 |
Max. P | 0.963028 |
Location | 18,693,711 – 18,693,804 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 75.42 |
Mean single sequence MFE | -21.14 |
Consensus MFE | -11.66 |
Energy contribution | -11.97 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.23 |
Mean z-score | -2.20 |
Structure conservation index | 0.55 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18693711 93 - 22407834 CAAUCUAAACGGUAUUCGUCCACCAGCAGCAAGUGAUGAUGGAUUAGCCAACCUAUA---AUACA-----UAGUAAAAUUAAUUAGGGCUCU---AGCACUAAU ..........(((((((((((((.........)))..)))))))..)))...((((.---....)-----)))........(((((.((...---.)).))))) ( -13.60) >DroGri_CAF1 21706 94 - 1 CAAUCCAAACGAUACUCAUCGACCAGCAACAAAUGUUGAUGGAUUAACCAACCUAUAUGGUUAAUA----UACAAAUAUUGUUUAU---AAUUGUAU---UUAU ((((..((((((((........(((.((((....)))).)))((((((((.......)))))))).----......))))))))..---.))))...---.... ( -19.90) >DroSec_CAF1 20691 93 - 1 CAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAAUGCUGAUGGAUUAGCCAACCUAUA---AUACA-----UAGAAAAAUUAUUUAGGGCUAU---AGCACAAAU .(((((....(((....(((((.(((((.....))))).)))))..)))...((((.---....)-----)))............)))))..---......... ( -24.50) >DroSim_CAF1 18997 93 - 1 CAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAAUGCUGAUGGAUUAGCCAACCUAUA---AUACA-----UAGAAAAAUUAAUUAGGGCUAU---AGCACAAAU .(((((....(((....(((((.(((((.....))))).)))))..)))...((((.---....)-----)))............)))))..---......... ( -24.50) >DroEre_CAF1 18960 85 - 1 CAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAGUGCUGAUGGAUUAGCCAACCUAUG---AUAAU-----UAGAAACAUGUAUUAGGCCUUG---A-------- .....((((.(((....(((((.(((((.....))))).)))))..)))..((((..---.....-----.............)))).))))---.-------- ( -19.85) >DroYak_CAF1 19173 91 - 1 CAGUCUAAGCGGUAUUCGUCCACCAUCAGCAAGUGCUGAUGGAUUAGCCAACCUAUGU--AUAAUAGAAAGAGAAAAAUGAGCUAAGUCUUU---A-------- .((.((.(((..((((..(((.((((((((....))))))))..........((((..--...))))...).))..)))).))).)).))..---.-------- ( -24.50) >consensus CAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAAUGCUGAUGGAUUAGCCAACCUAUA___AUAAA_____UAGAAAAAUUAAUUAGGGCUAU___AG____AAU ..........(((....(((((.(((((.....))))).)))))..)))....................................................... (-11.66 = -11.97 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:44 2006