| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,691,367 – 18,691,467 |
| Length | 100 |
| Max. P | 0.741194 |
| Location | 18,691,367 – 18,691,467 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.78 |
| Mean single sequence MFE | -37.64 |
| Consensus MFE | -22.04 |
| Energy contribution | -21.92 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18691367 100 + 22407834 GUGCGCGCCUGUCAGCUGUUGCCAUUCGCAGCGAGACCAUU-CAGCUGACGGAAAACAGAUGUGGGUGGUGUAAAGC---------CCAUGGGCAGGUGUUGGUGACGUU ....(((((((((..(((((....((((((((..((....)-).)))).)))).)))))..((((((........))---------)))).))))))))).(....)... ( -38.00) >DroSec_CAF1 18358 101 + 1 GUCCGCGCCUGUCAGCUGUUGCCAUUCGCAGCGAGACAAUUGCAGCUGAUGGAAUACAGAUGUGGGUGGUGGGAAGC---------UCAUGGGCAGGUGUAUGUGACGUU (((((((((((((((((.(..(((((((((((((.....))))..(((........))).)))))))))..)..)))---------)....)))))))))..).)))... ( -40.80) >DroSim_CAF1 16643 101 + 1 GUGCGCGUCUGUCAGCUGUUGCCAUUCGCAGCGAGGCAAUUGCAGCUGAUGGAAAUCAGAUGUGGGUGGUGGGAAGC---------UCAUGGACAGGUGUAUAUGACGUU ((((((((((((.((((.(..(((((((((((((.....))))..(((((....))))).)))))))))..)..)))---------).))))))..))))))........ ( -42.10) >DroEre_CAF1 16493 100 + 1 GUUUUCAAUUGGCAGCUGUUGCCG-UCGCAGCGAGACAAUUACAGCUGAUGGCAAGCAGAUGUGGAGUGUGGGAAUC---------GCAUGGGCAGGUGUUGUUUACGUU (((..((.((.(((.(((((((((-((..(((............))))))))).))))).))).))...))..))).---------((.(((((((...))))))).)). ( -28.30) >DroYak_CAF1 16649 110 + 1 GUGUACGACUGUCAGCUGUUGCCAUUCACAGCGAGACAAUUACAGCUGUUGACAAACAGUUGUGGGGGGUGGAAAGCGUUCCCAAAGCAUGGGCAGGUGUAGUUGACGUU ..((.((((((.((.((((..((((.(.............((((((((((....))))))))))(((..((.....))..)))...).)))))))).))))))))))... ( -39.00) >consensus GUGCGCGACUGUCAGCUGUUGCCAUUCGCAGCGAGACAAUUACAGCUGAUGGAAAACAGAUGUGGGUGGUGGGAAGC_________GCAUGGGCAGGUGUAGGUGACGUU ....(((((((((.(((((........)))))...((..(((((.(((........))).)))))...)).....................))))))))).......... (-22.04 = -21.92 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:43 2006