Locus 6661

Sequence ID 2L_DroMel_CAF1
Location 18,690,445 – 18,690,543
Length 98
Max. P 0.627321
window10624

overview

Window 4

Location 18,690,445 – 18,690,543
Length 98
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 75.93
Mean single sequence MFE -25.65
Consensus MFE -9.55
Energy contribution -12.80
Covariance contribution 3.25
Combinations/Pair 1.25
Mean z-score -2.22
Structure conservation index 0.37
SVM decision value 0.19
SVM RNA-class probability 0.627321
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18690445 98 - 22407834
CAAAAACAGAUCUUGUUUUCCGCAUUCCCUA-UACU-AAAUGGGUGUUGUCGCAGCUGUGACGUCAUUUGUUUACAACAAA-UGGCGCGGUUAAUAAUCAG---
........(((..((((..((((....((((-(...-..)))))....(((((....)))))(((((((((.....)))))-))))))))..)))))))..--- ( -30.40)
>DroSec_CAF1 17446 98 - 1
CAACAACUGAUCUUGUUUUCCGCAUUCCCUA-UACU-AAAUGGGUGUUGUCGCACCGGUGACGUCUUUUGUUUACAGCAAA-UGGCGCGGUGAAUAAUCAU---
.......((((..(((((.((((....((((-(...-..)))))....(((((....)))))(((.(((((.....)))))-.))))))).))))))))).--- ( -27.20)
>DroSim_CAF1 15717 98 - 1
CAACAACAGAUCUUGUUUUCCGCAUUCCCUA-UACU-AAAUGGGUGUUGUCGCACCGGUGACGUCAUUUGUUUACAGCAAA-UGGCGCGGUGAAUAAUCAG---
........(((..(((((.((((....((((-(...-..)))))....(((((....)))))(((((((((.....)))))-)))))))).))))))))..--- ( -31.10)
>DroEre_CAF1 15527 98 - 1
CAACAACAGGUCUUGUUUUCCGCAUUCCCUA-UACU-AAAUGGGUGUUGUCGCACCGGUGACGUCAUUUGUUUACAACAAA-UGGCGCGGUGAAUAAUCAG---
............((((((.((((....((((-(...-..)))))....(((((....)))))(((((((((.....)))))-)))))))).))))))....--- ( -30.00)
>DroWil_CAF1 19926 86 - 1
UACAUACAAAUUGCGUUUUCCGCAUUCCCUAAUAGC-GAAC-----------AACAAGUGACGUCAUUUGUUUACAAAAAAAUUACAUGGCAAAAA--CA----
..........((((......(((...........))-)...-----------((((((((....)))))))).................))))...--..---- ( -12.80)
>DroAna_CAF1 15385 95 - 1
AAACAUCAGAUCUUGUUUUCCGCAUUCCUUG-UGGUCUAACAGGCGUUGUCACACCUGUGACGUCAUUUGUUUACAUCAAG-C----C---UAUGAAUCAGAGU
........(((((((((..(((((.....))-)))...)))))).)))(((((....))))).((((..((((.....)))-)----.---.))))........ ( -22.40)
>consensus
CAACAACAGAUCUUGUUUUCCGCAUUCCCUA_UACU_AAAUGGGUGUUGUCGCACCGGUGACGUCAUUUGUUUACAACAAA_UGGCGCGGUGAAUAAUCAG___
............((((((.((((.........................(((((....)))))(((((((((.....))))).)))))))).))))))....... ( -9.55 = -12.80 +   3.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:42 2006