Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,965,710 – 1,965,816 |
Length | 106 |
Max. P | 0.741684 |
Location | 1,965,710 – 1,965,816 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.95 |
Mean single sequence MFE | -27.57 |
Consensus MFE | -21.93 |
Energy contribution | -21.97 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.28 |
Mean z-score | -2.30 |
Structure conservation index | 0.80 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1965710 106 - 22407834 -------------UACCUUCGCUAUUUGCGCCGGGCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUUUCAGUUUGUUUUUAAUUGAAAAUAACAUUUUUCCAA-AACAAACU -------------.......(((((((((.....)))))))))..(((((((((((..........)))).)))))))(((((((((.....(((((......))))).))-))))))). ( -29.90) >DroSec_CAF1 8174 106 - 1 -------------UACCUUCGCUAUUUGCGCCGGGCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGUUUUUAAUUGAAAAUUACAUUUUUCCAA-AACAAACU -------------....((((((((((((.....)))))))))...)))(((((((.(((.....))).))).))))((((((((((.....(((((......))))).))-)))))))) ( -29.40) >DroSim_CAF1 12320 106 - 1 -------------UACCUUCGCUAUUUGCGCCGGGCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGUUUUUAAUUGAAAAUUACAUUUUUCCAA-AACAAACU -------------....((((((((((((.....)))))))))...)))(((((((.(((.....))).))).))))((((((((((.....(((((......))))).))-)))))))) ( -29.40) >DroEre_CAF1 17299 111 - 1 AC--------GCGUACCUUUGCUGUUUGCGCUGGCCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGCAUUUAAUUGAAAAUUACAUUUUUCCAA-AACAAACU ..--------((((.(((((((((((((.(....))))))))).....)))))))))...(((((((((.(((....)))..))........(((((......)))))..)-)))))).. ( -23.50) >DroYak_CAF1 15219 120 - 1 GUGUGUUUGUGUGUAUCUUUGCUAUUUGCGCUGGCCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGCUUUUAAUUGAGAAUUACAUUUUUCCAAAAACAAACU ....((((((.....(((((((((((((.(....)))))))))...)))))(((((.(((.....))).)))(((((((((.......)))))))))..........))....)))))). ( -30.70) >DroAna_CAF1 38684 101 - 1 -----------------UUCACUGUUUGCUCUGGGCAAAUAGUUUUAAAGAGGGCGCCAAUUUGUUUGCCGUUUGUCAGUUUGU-UUUAAUUGAAAAUUACAUUUUUUAAA-GAAGGAUU -----------------((((((((((((.....)))))))))(((((((((((((..........))))((...((((((...-...)))))).....)).)))))))))-)))..... ( -22.50) >consensus _____________UACCUUCGCUAUUUGCGCCGGGCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGUUUUUAAUUGAAAAUUACAUUUUUCCAA_AACAAACU ....................(((((((((.....)))))))))......(((((((.(((.....))).))).))))((((((((.......(((((......)))))....)))))))) (-21.93 = -21.97 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:23 2006