Locus 6657

Sequence ID 2L_DroMel_CAF1
Location 18,677,839 – 18,677,933
Length 94
Max. P 0.532587
window10620

overview

Window 0

Location 18,677,839 – 18,677,933
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 81.90
Mean single sequence MFE -20.78
Consensus MFE -12.09
Energy contribution -12.78
Covariance contribution 0.70
Combinations/Pair 1.08
Mean z-score -1.99
Structure conservation index 0.58
SVM decision value -0.00
SVM RNA-class probability 0.532587
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18677839 94 + 22407834
CUGCGAGGAGGCCUUGCCCACGAAGGGAAUUAGGCCGGUAAUGCCCAUGGUUAGGACCAACAACAAUAACACAUAUAAAAACGAAAUAAACAAU
...((....(((((..(((.....)))....)))))(((...(((...)))....))).......................))........... ( -20.60)
>DroGri_CAF1 6516 78 + 1
CCUGGCCGAUGCCUUCUCCAGGAACGGUAUCAGGCCCGUUAUGCCCAUGAC-------AACAAAU----CACAAACAAUAA-----UCAACAAU
...(((((((((((((.....))).)))))).)))).(((((....)))))-------.......----............-----........ ( -20.70)
>DroSec_CAF1 4978 94 + 1
CUGCGAGGAGGCCUUGCCCACGAAGGGAAUUAGGCCGGUAAUGCCCAUGGUUAGGACCAACAAUAAUAACACAUAUAAAAACGAAAUAAACAAU
...((....(((((..(((.....)))....)))))(((...(((...)))....))).......................))........... ( -20.60)
>DroSim_CAF1 3247 93 + 1
CUGCGAGGAGGCCUUGCCCACGAAGGGAAUUAGGCCGGUAAUGCCCAUGGUUAGGACCAACAAUAAUAACACAUA-AAAAACGAAAUAAACAAU
...((....(((((..(((.....)))....)))))(((...(((...)))....))).................-.....))........... ( -20.60)
>DroEre_CAF1 3089 91 + 1
CUGCGAGGAGGCCUUGCCCACGAAGGGUAUUAGGCCGGUAAUGCCCAUGAUUAGGCCCAACAAUAUAAACACAUAUAAGAACAA---AAACAAU
......((.((((((((((.....)))))..)))))......(((........)))))..........................---....... ( -21.10)
>DroYak_CAF1 3241 91 + 1
CUGCGAGGAGGCCUUGCCCACGAAGGGUAUUAGGCCGGUAAUGCCCAUGAUAAGGCCCAACAAUAUAAACACAUAUAAAAACAA---AAACAAU
......((.((((((((((.....)))))..)))))......(((........)))))..........................---....... ( -21.10)
>consensus
CUGCGAGGAGGCCUUGCCCACGAAGGGAAUUAGGCCGGUAAUGCCCAUGAUUAGGACCAACAAUAAUAACACAUAUAAAAACGA__UAAACAAU
......((.(((((..(((.....)))....)))))((.....))...........)).................................... (-12.09 = -12.78 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:38 2006