Locus 6656

Sequence ID 2L_DroMel_CAF1
Location 18,673,470 – 18,673,565
Length 95
Max. P 0.853491
window10619

overview

Window 9

Location 18,673,470 – 18,673,565
Length 95
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 84.88
Mean single sequence MFE -27.34
Consensus MFE -18.64
Energy contribution -19.39
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.68
SVM decision value 0.80
SVM RNA-class probability 0.853491
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18673470 95 - 22407834
---------------CAAGCUCCCACUCUGGCGCACACACACACACGCGCAGCUGUGGGUAAUUAAAAGCCAAAUAUAGUGUGCAUGUGAGAGACGCAAAUAUGCACAGC
---------------...(((....((((.((((((((...((((.((...))))))(((........))).......))))))..)).))))..(((....)))..))) ( -27.40)
>DroSim_CAF1 27601 95 - 1
---------------CAAGCUCCCACUCUGGCACACACACACACACGCGCAGCUGGGGGUAAUUAAAAGCCAAAUAUAGUGUGCAUGUGAGAGACGCAAAUAUGCACAGC
---------------...(((((((..(((((..............)).))).)))))))...................(((((((((...........))))))))).. ( -24.74)
>DroEre_CAF1 26547 105 - 1
ACACACACACACGGACAAGCUCCC-CUCUCGCACAC----ACACACGCUCAGCGGGGGGUAAUUAAAUCCCAAAUAUAUUGUGCAUGUGAGAGACGCAAAUAUGCACAGC
............(((.....))).-((((((((..(----(((..(((...))).(((((......)))))........))))..))))))))..(((....)))..... ( -28.60)
>DroYak_CAF1 26502 95 - 1
---------------CAAGCUCCCACUCUCGCACACAGGCACACACGCUCAGCGGGGGGUAAUUAAAACCCAAAUAUAUUGUGCAUGUGAGAGACGCAAAUAUGCACAGC
---------------...(((....((((((((.....(((((..(((...)))..((((.......))))........))))).))))))))..(((....)))..))) ( -28.60)
>consensus
_______________CAAGCUCCCACUCUCGCACACACACACACACGCGCAGCGGGGGGUAAUUAAAACCCAAAUAUAGUGUGCAUGUGAGAGACGCAAAUAUGCACAGC
..................((((((...(((((..............)).)))..))))))...................(((((((((...........))))))))).. (-18.64 = -19.39 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:37 2006