| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,668,764 – 18,668,884 |
| Length | 120 |
| Max. P | 0.640538 |
| Location | 18,668,764 – 18,668,884 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.75 |
| Mean single sequence MFE | -37.48 |
| Consensus MFE | -30.56 |
| Energy contribution | -31.60 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18668764 120 - 22407834 GAGGGAGAGCGGAAGGAAGACCGUUCAGGAGGCCAUAGAAAGCAUUAAAUUGCGUUCGUCCAUGAUGACCGAGUUGAAUAUCAAAUGCCAGAAGGCGGCCAUCGAGUUCCUAUCCGUUCG ......((((((((((((..((.....)).((((...((..(((......)))(.(((((...))))).)..........))....(((....)))))))......))))).))))))). ( -38.50) >DroSec_CAF1 21445 120 - 1 GAGGGAGAGCGGAAGGAAGACCGUAAAGGAGGCCAUAGAAAGCAUUAAAUUGCGAUCGUCCAUGAUGACCGAGUUGAAUAUCAAAUGCCAGAAGGCGGCCAUAGAGUUCCUAUCCGUUCG ......((((((((((((..((.....)).((((...((..(((......)))(.(((((...))))).)..........))....(((....)))))))......))))).))))))). ( -38.50) >DroSim_CAF1 22722 120 - 1 GAGGGAGAGCGGAAGGCAGACCGUUAAGGAGGCCAUAGAAAGCAUUAAAUUGCGUUCGUCCAUGAUGACCGAGUUGAAUAUCAAAUGCCAGAAGGCGGCCAUAGAGUUCCUAUCCGUUCG ......((((((((((....((.....)).((((...((..(((......)))(.(((((...))))).)..........))....(((....)))))))........))).))))))). ( -35.20) >DroEre_CAF1 21710 120 - 1 GAGAGAGAGCGGCAGGAAGACCGUUCAGGAGGCCAUGGAGAGCAUUAAAUUGCGAUCAACCAUGAUGACGGAGUUGAAUAUCAAAUGCCAGAAGUCGGCCAUUGAGUUCCUAUCGGUUCG ......(((((..(((((..((.....)).((((...((..(((......)))..))......(((...((..(((.....)))...))....)))))))......)))))..).)))). ( -32.70) >DroYak_CAF1 21620 120 - 1 GAGGGAGAGCGGCAGGAAGACCGCUCAGGAGGCCAUGGAAAGCAUUAAAUUGCGAUCUUCCAUGAUGGCGGAGUUGAACAUCAAAUGCCAGAAGGCGGCCAUCGAGUUCCUAUCGGUUCG .(((((((((((........))))))..((((((((((((.(((......)))....))))))..(((((...(((.....))).)))))......)))).))...)))))......... ( -42.50) >consensus GAGGGAGAGCGGAAGGAAGACCGUUCAGGAGGCCAUAGAAAGCAUUAAAUUGCGAUCGUCCAUGAUGACCGAGUUGAAUAUCAAAUGCCAGAAGGCGGCCAUAGAGUUCCUAUCCGUUCG ......((((((((((((..((.....)).((((...((..(((......)))..)).....(((((...........)))))...(((....)))))))......))))).))))))). (-30.56 = -31.60 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:29 2006