| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,665,789 – 18,665,897 |
| Length | 108 |
| Max. P | 0.844694 |
| Location | 18,665,789 – 18,665,897 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 73.62 |
| Mean single sequence MFE | -24.39 |
| Consensus MFE | -16.74 |
| Energy contribution | -16.97 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18665789 108 - 22407834 AU-AUGCCCAGUGAAAAUCAUCUGCAUCACCAUCACUUGGGACACACUGGUGGAUUAUCUCCGCAUCAUCAUCACUUGGUGGGCAUUGGGACAAUGUUAAUGCCAUCAC ..-..(((.(((((........((..((.(((.....)))))..))...(((((.....))))).......))))).))).((((((((.......))))))))..... ( -27.70) >DroVir_CAF1 67928 90 - 1 AU-AUGCCCAGUGAUAAUCAUCUGCAUCACCAUCAUCUGGGUCUCAGUGGUGGACUGUCUCCGCAUCAUCAUCAUUUGGUACGAUAUCAGA------------------ ..-.((((.((((((...((.(((...(.(((.....))))...)))))(((((.....)))))......)))))).))))..........------------------ ( -19.80) >DroGri_CAF1 61229 91 - 1 AUAAUGCCCAGUGAUAAUCAUCUACAUCACCAUCAUCUGGGACUCAGUGGUGGUCUAUCGCCACAUCAUCAUCAUUUGGUACGCUAUGAUA------------------ ....((((.((((((...........((.(((.....)))))....(((((((....)))))))......)))))).))))..........------------------ ( -21.40) >DroEre_CAF1 18386 107 - 1 AC-AUGCCCAGUGAAAAUCAUCUGCAUCACCAUCACUUGGGACACAGUGGCGGAUUGUCUCCGCAUCAUCAUCACUUGGUGGGCAUUG-GACUAUGUUAAUGUCAUAAA ..-..(((.(((((....((.(((..((.(((.....)))))..)))))(((((.....))))).......))))).))).(((((((-(......))))))))..... ( -31.30) >DroMoj_CAF1 63823 100 - 1 AU-AUGCCCAGUGACAAUCAUCUGCAUCACCAUCAUCUGGGUCUCAGUGGUGGUUUAUCUCCGCAUCAUCAUCAUCUGGUAUGGCAACAAA-UAUUAUAGUG------- .(-(((((..((((........(((...(((((((.(((.....))))))))))........)))......))))..))))))........-..........------- ( -19.04) >DroAna_CAF1 16302 93 - 1 CA-AUGCCCAGUGACAAUCAUUUGCAUCACCACCACUUGGGACACAGUGGUGGGCUGUCGCCCCAUCAUCAUCAUUUGGUAGGGUCUUCCACUC--------------- ..-..((((.(((((((....)))..)))).((((((.(.....)))))))))))....((((.((((........)))).)))).........--------------- ( -27.10) >consensus AU_AUGCCCAGUGAAAAUCAUCUGCAUCACCAUCACCUGGGACACAGUGGUGGACUAUCUCCGCAUCAUCAUCAUUUGGUAGGCUAUGAGA_UA_______________ ....((((.(((((....((.(((..((.(((.....)))))..)))))((((.......)))).......))))).))))............................ (-16.74 = -16.97 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:20 2006