Locus 6647

Sequence ID 2L_DroMel_CAF1
Location 18,661,991 – 18,662,111
Length 120
Max. P 0.500000
window10599

overview

Window 9

Location 18,661,991 – 18,662,111
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.65
Mean single sequence MFE -30.97
Consensus MFE -26.24
Energy contribution -26.80
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.85
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18661991 120 - 22407834
AGCUAUGUAAAAAAAAAGUGUCAGCACUAUCUACAUGUAUAGUUUGAAGUUUCCGAAAUUAGCCGAUUAGAGCGCUGCUUGCGAGUAGUUCUCAGAUUAGCCGCCAGGCGGAUAAGUUUU
(((((((.........((((....)))).........)))))))..........((((((..((((((.(((.((((((....)))))).))).)))).(((....)))))...)))))) ( -27.17)
>DroSec_CAF1 14784 113 - 1
------GUGUAGAAAAAGUGUCAGCACUAUCUACAUGUAUAGUUUAAAGUUUCCGAAAUUAGCCGAA-AGAGCGCUGCUUGCGAGUAGUUCUCAGAGUAGCCGCCAGGCGGAUAAGUUUU
------(((((((...((((....)))).)))))))...............((((......(((...-.).))(((((((..(((.....))).))))))).......))))........ ( -32.60)
>DroSim_CAF1 15175 113 - 1
------GUGUAGAAAAAGUGUCAGCACUAUCUACAUGUAUAGUUUAAAGUUUCCAAAAUUAGCCGAU-AGAGCGCUGCUUGCGAGUAGUUCUCAGAUUAGCCGUAAGGUGGAUAAGUUUA
------(((((((...((((....)))).)))))))........((((.(((((.............-.(((.((((((....)))))).)))......(((....)))))).)).)))) ( -29.90)
>DroEre_CAF1 14687 112 - 1
------GUGUAGAAAAAGUGUCAGCACUAUCUACAUGUAUAGUUUAAAGUUUCCGAAAUUGGCCAUG-AGAGCGCUGCUGGUAAGUAGUUCUCAGAGCGGCCGUAAGGUGGAUAAAU-UG
------(((((((...((((....)))).)))))))...(((((((.....((((....(((((.((-(((..((((((....)))))))))))....))))).....)))))))))-)) ( -35.80)
>DroYak_CAF1 14627 112 - 1
------GUGUAGAAAAAGGGCCAGCACUAUCUACAUGUAUAGUUUACAGUUUCCGAAAUGAGCCACC-AGAGCGCUGCUUGUAAGUAGUUCUCACAGUAGCCGCAAGGUGGAUAAUU-GU
------(((((((...((........)).))))))).........(((((((((.............-.(((.((((((....)))))).)))......(((....)))))).))))-)) ( -29.40)
>consensus
______GUGUAGAAAAAGUGUCAGCACUAUCUACAUGUAUAGUUUAAAGUUUCCGAAAUUAGCCGAU_AGAGCGCUGCUUGCGAGUAGUUCUCAGAGUAGCCGCAAGGUGGAUAAGUUUU
......(((((((...((((....)))).)))))))...............(((...............(((.((((((....)))))).)))......(((....))))))........ (-26.24 = -26.80 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:19 2006