Locus 6646

Sequence ID 2L_DroMel_CAF1
Location 18,657,946 – 18,658,058
Length 112
Max. P 0.546280
window10598

overview

Window 8

Location 18,657,946 – 18,658,058
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 78.21
Mean single sequence MFE -24.93
Consensus MFE -12.12
Energy contribution -16.40
Covariance contribution 4.28
Combinations/Pair 1.12
Mean z-score -1.86
Structure conservation index 0.49
SVM decision value 0.03
SVM RNA-class probability 0.546280
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18657946 112 - 22407834
AUUGAAUUUGGAUAGGUUGCAAAAGAGCUGGGAUUAAUGCCAACUGAUGGAAGUUGAUCUCAUUUGAUUGCACUUAUGUACCAUAAGCCUCUGCAAACAAAUUAUAUAAAAA
....((((((.((((((.((((..(((.((((((((((.(((.....)))..)))))))))))))..)))))))))).........((....))...))))))......... ( -26.00)
>DroSec_CAF1 10690 106 - 1
AUUGAAUUUGGAGAGGUUGCAAAAGAGCUGGGAUUAAUGCGAACUGAUGGAUGUUGAUCUCAUUUGAUUGCACUUAUGUACCAUAAGCCUCUGCAAACAAAUUAUA------
......((((.(((((.(((((..(((.((((((((((((.(.....).).))))))))))))))..)))))((((((...))))))))))).)))).........------ ( -28.40)
>DroSim_CAF1 11076 112 - 1
AUUGAAUUUGGAGAGGUUGCAAAAGAGCUGGGAUUAAUGAGAACUGAUGGAUGUUGAUCUCAUUUGAUUGCACUUGUGUACCAUAAGCCUCUGCAAACAAAUUAUAUAAAAA
......((((.(((((.(((((..(((.((((((((((..............)))))))))))))..)))))((((((...))))))))))).))))............... ( -28.14)
>DroEre_CAF1 10750 86 - 1
AUUGAAUUUGGAGAGCUUGC---------------------AACUGAAGGAAAUUCAUAGCAGCUCAUUGCACUU-----UCAUAAGCCGCUGCAGACAAUUAAUAUUGAAA
(((((..(((..(((((.((---------------------...((((.....))))..))))))).((((((((-----....)))....))))).))))))))....... ( -15.30)
>DroYak_CAF1 10584 107 - 1
AUUGAAUUUGGAGAGCUUGUCAAAGAGCUGGGAUUAGUUCGAAUUGAUGGAAGUUGAUCUCAUUUGAUUGCACUU-----UCAUAAGCCUCUGCAAACAAUUAAUAUAAAAA
((((..((((.((((((((((((.((((((....))))))...))))((((((((((((......))))).))))-----))))))).)))).))))))))........... ( -26.80)
>consensus
AUUGAAUUUGGAGAGGUUGCAAAAGAGCUGGGAUUAAUGCGAACUGAUGGAAGUUGAUCUCAUUUGAUUGCACUU_UGUACCAUAAGCCUCUGCAAACAAAUUAUAUAAAAA
......((((.(((((.(((((..(((.((((((((((..............)))))))))))))..)))))(((((.....)))))))))).))))............... (-12.12 = -16.40 +   4.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:18 2006