Locus 6644

Sequence ID 2L_DroMel_CAF1
Location 18,650,139 – 18,650,231
Length 92
Max. P 0.995805
window10595

overview

Window 5

Location 18,650,139 – 18,650,231
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 96.07
Mean single sequence MFE -31.34
Consensus MFE -27.44
Energy contribution -28.68
Covariance contribution 1.24
Combinations/Pair 1.04
Mean z-score -2.24
Structure conservation index 0.88
SVM decision value 2.62
SVM RNA-class probability 0.995805
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18650139 92 - 22407834
ACUUUGGCAUGCAAUGGGCGUGAUUAACAACUUCCCCUUGUCGCCGAGGAGUGAAGUGAGUGGAUGAUGGCAAAUUGCCUUGAUUCACUUGG
.(((((((..((((.(((.((........))..))).)))).)))))))........((((((((.(.(((.....))).).)))))))).. ( -31.70)
>DroSec_CAF1 2949 92 - 1
ACUUUGGCAUGCAAUGGGCGUGAUUAACAACUUCCCCUUGUCGCCGAGGAGUGAAGUGAGUGGAUGAUGGCAAAUUGCCUUGAUUCACUUGG
.(((((((..((((.(((.((........))..))).)))).)))))))........((((((((.(.(((.....))).).)))))))).. ( -31.70)
>DroSim_CAF1 3364 92 - 1
ACUUUGGCAUGCAAUGGGCGUGAUUAACAACUUCCCCUUGUCGCCGAGGAGUGAAGUGAGUGGAUGAUGGCAACUUGCCUUGAUUCACUUGG
.(((((((..((((.(((.((........))..))).)))).)))))))........((((((((.(.(((.....))).).)))))))).. ( -31.70)
>DroEre_CAF1 2927 88 - 1
ACUUUGGCAUGCAAUGGGCGUGAUUAACAACUUCCCCUUGUCGCCGAGGAGUGAAG----UGGAUGAUGGCAAAUUGCCUUGAUUCACUUGG
.(((((((..((((.(((.((........))..))).)))).)))))))....(((----(((((.(.(((.....))).).)))))))).. ( -31.50)
>DroYak_CAF1 2918 88 - 1
ACUUCGGCAUGCAAUGGGCGUGAUUAACAACUUCCCCUUGUCGCCGAGUAGUGAAG----UGGAUGAUGGCAAAUUGCCUUGAUUCACUUGG
..((((((..((((.(((.((........))..))).)))).)))))).....(((----(((((.(.(((.....))).).)))))))).. ( -30.10)
>consensus
ACUUUGGCAUGCAAUGGGCGUGAUUAACAACUUCCCCUUGUCGCCGAGGAGUGAAGUGAGUGGAUGAUGGCAAAUUGCCUUGAUUCACUUGG
.(((((((..((((.(((.((........))..))).)))).)))))))........((((((((.(.(((.....))).).)))))))).. (-27.44 = -28.68 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:16 2006