| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,646,232 – 18,646,352 |
| Length | 120 |
| Max. P | 0.685488 |
| Location | 18,646,232 – 18,646,352 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.49 |
| Mean single sequence MFE | -30.23 |
| Consensus MFE | -27.15 |
| Energy contribution | -27.80 |
| Covariance contribution | 0.65 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.685488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18646232 120 - 22407834 GCCUCUAAUGAUGCCGCAAUUAGGCCGCAUUAUGGACACAUUUAUCAUCCACAGACCGGACCGGGGAAACGGAAUGCGAGAUAGAGAUGUCACAAACAAAUGACUCUAAUGAGUGCGUAA (((((..(((((((.((......)).))))))).((((..((((((.(((.......)))(((......))).......))))))..))))...................))).)).... ( -32.20) >DroSec_CAF1 119019 120 - 1 GCCUCUAAUGAUGCCGCAAUUAGGCCGCAUUAUGGACACAUUUAUCAUCCACAGACCGGACCGGGCAAACGGAAUGCAAGAUAGAGAUGUCACAAACAAAUGACUCUAAUGAGUGCGUAA (((((..(((((((.((......)).))))))).((((..((((((.(((.......)))(((......))).......))))))..))))...................))).)).... ( -32.20) >DroSim_CAF1 120625 120 - 1 GCCUCUAAUGAUGCCGCAAUUAGGCCGCAUUAUGGACACAUUUAUCAUCCACAGACCGGACCGGGCAAACGGAAUGCGAGAUAGAGAUGUCACAAACAAAUGACUCUAAUGAGUGCGUAA (((((..(((((((.((......)).))))))).((((..((((((.(((.......)))(((......))).......))))))..))))...................))).)).... ( -32.20) >DroEre_CAF1 117954 119 - 1 GCCUCUAAUGAUGCCGCAAUUAGGCCGCAUUAUGGACACAUUUAUCAUCCACAGACCGGACCGGG-CAACGGAAUGCGAGAUAGAGAUGUCACAAACAAAUGACUCUAAUGAGUGCGUAA (((((..(((((((.((......)).))))))).((((..((((((.(((.......)))(((..-...))).......))))))..))))...................))).)).... ( -32.00) >DroYak_CAF1 119345 119 - 1 GCUUCUAAUGAUCCCGCAAUUAGGCCGCAUUAUGGACACAUUUAUCAUCCACAGACCGGACCGGG-AAACGGAAUGCGAGAUAGAGAUGUCACAAACAAAUGACUCUAAUGAGUGCGUAA ...((((((.........)))))).(((....((((((..((((((.(((.......)))(((..-...))).......))))))..)))).))........((((....)))))))... ( -26.90) >DroAna_CAF1 107326 100 - 1 GCCUCUAAUGAUGCCGCAAUUAGGCUGCAUUAUGGACACAUUUAUCAUCCACAGACC--------------------GAGAUAGAGAUGUCGCAAACAAAUGACUCUAAUGAGUGCGUAA ((.....(((((((.((......)).))))))).((((..((((((.((........--------------------))))))))..))))))......(((((((....)))).))).. ( -25.90) >consensus GCCUCUAAUGAUGCCGCAAUUAGGCCGCAUUAUGGACACAUUUAUCAUCCACAGACCGGACCGGG_AAACGGAAUGCGAGAUAGAGAUGUCACAAACAAAUGACUCUAAUGAGUGCGUAA (((((..(((((((.((......)).))))))).((((..((((((.(((.......)))(((......))).......))))))..))))...................))).)).... (-27.15 = -27.80 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:15 2006