Locus 6640

Sequence ID 2L_DroMel_CAF1
Location 18,641,749 – 18,641,868
Length 119
Max. P 0.995407
window10588

overview

Window 8

Location 18,641,749 – 18,641,868
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 90.53
Mean single sequence MFE -30.40
Consensus MFE -26.64
Energy contribution -26.00
Covariance contribution -0.64
Combinations/Pair 1.08
Mean z-score -2.15
Structure conservation index 0.88
SVM decision value 2.57
SVM RNA-class probability 0.995407
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18641749 119 + 22407834
CCCCCCUACCAACCAACCAUCCAAUGGUUCCCACUUCUGCAGCUGCAUCUGCAACCAACUGCAGUCGCCGGGUCUCGAAAGCUUCGCAAUUUGCAAUCCACAGCAGCAGGGACCCGCAU
..............((((((...))))))........(((....((..(((((......)))))..)).(((((((((.....))((....(((........))))).)))))))))). ( -31.30)
>DroSec_CAF1 114506 115 + 1
CC----CACCAACCAACCACCCAAAGGUUCCCACUUCUGCAGCUGCAUCUGCAACCAACUGCAGUCGUCGGGUCUCCAAAGCUUCGCAAUUUGCAAUCCACAGCAGCAGGGACCCGCAU
..----........((((.......)))).......((((((.(((....))).....))))))..(.((((((.((...((...))...((((........))))..))))))))).. ( -28.50)
>DroSim_CAF1 116132 115 + 1
CC----UACCAACCAACCAUCCAAAGGUUCCCACUUCUGCAGCUGCAUCUGCAACCAACUGCAGUCGCCGGGUCUCCAAAGCUUCGCAAUUUGCAAUCCACAGCAGCAGGGACCCGCAU
..----...................((.((((....((((((((((..(((((......)))))..)).((....))..))))..((.....))........))))..)))).)).... ( -29.90)
>DroEre_CAF1 113474 110 + 1
CC----CUCCAA-----CAUCCAAGUGCUCCCACUUCUGCAGCUGCAUCUGCAACCAACUGCAGUCGCCGGGUUUCGAAAGCUUUGCAAUUUGCAAUCCACAGCAGCAGGGACCAGCAU
..----......-----..((((((((....)))))((((.(((((..(((((......)))))..)).(((((.((((.((...))..)))).)))))..))).)))))))....... ( -29.80)
>DroYak_CAF1 114909 111 + 1
CC----CACCAA----CCAUUCAAGUGCUCCCCCUUCUGCAGCUGCAUCUGCAACCAACUGCAGUCGCCGGGUCUCGAAAGCUUCGCAAUUUGCAAUCCACAGCAGCAGGGACCAGCAU
..----......----........(((((..((((.((((....((..(((((......)))))..)).((((..(....)....((.....)).))))...)))).))))...))))) ( -32.50)
>consensus
CC____CACCAACCAACCAUCCAAAGGUUCCCACUUCUGCAGCUGCAUCUGCAACCAACUGCAGUCGCCGGGUCUCGAAAGCUUCGCAAUUUGCAAUCCACAGCAGCAGGGACCCGCAU
.........................((.((((....((((....((..(((((......)))))..)).((((..(....)....((.....)).))))...))))..)))).)).... (-26.64 = -26.00 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:10 2006