Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,965,174 – 1,965,271 |
Length | 97 |
Max. P | 0.909260 |
Location | 1,965,174 – 1,965,271 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 80.28 |
Mean single sequence MFE | -27.91 |
Consensus MFE | -19.62 |
Energy contribution | -19.22 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.14 |
Mean z-score | -2.04 |
Structure conservation index | 0.70 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1965174 97 - 22407834 AACUGUGUACAUAUUUCGCGUGCA--UUUCGUUUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUCGGCUUGG-------GC ..(((((.......((((((((((--.......))).)))))))...........))))).((.((...((.((((((....)))))).))...)).-------)) ( -26.37) >DroSec_CAF1 7639 97 - 1 AACUGUGUACAUAUUUCGCGUGCA--UUUCAGUUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUCGGCUUGG-------GC ((((((((((.........)))))--...)))))((((((((....((.((.....)).)).))))))))((((((((....))))))...))....-------.. ( -28.30) >DroSim_CAF1 11791 97 - 1 AACUGUGUACAUAUUUCGCGGGCA--UUUCGGUUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUCGGCUAGG-------GC ..(((((.........)))))((.--...((((.(((.(((((((.......)))))))...)))))))((.((((((....)))))).))))....-------.. ( -27.80) >DroEre_CAF1 16812 106 - 1 AACUGUGUACAUAUUUCCCCAGCAUUUUUUGGCUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGGGCAGAUACGAAAGUAUCUGUCGGCUGCAUCUUGGCC ..............................((((((..(((((((.......)))))))..))(((.(.(((((((((....))))))))).).))).....)))) ( -34.10) >DroYak_CAF1 14702 77 - 1 AAC----------------------AUUUCGGCUGCGCUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUUGGCUUGC-------AC ...----------------------.........((.((((((((.......)))))))).))(((..((..((((((....))))))...)).)))-------.. ( -23.00) >consensus AACUGUGUACAUAUUUCGCGUGCA__UUUCGGUUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUCGGCUUGG_______GC .................((..............((((.(((((((.......)))))))...))))...((.((((((....)))))).))))............. (-19.62 = -19.22 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:20 2006