Locus 6639

Sequence ID 2L_DroMel_CAF1
Location 18,641,198 – 18,641,318
Length 120
Max. P 0.839076
window10587

overview

Window 7

Location 18,641,198 – 18,641,318
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -34.54
Consensus MFE -29.32
Energy contribution -29.60
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -1.55
Structure conservation index 0.85
SVM decision value 0.74
SVM RNA-class probability 0.839076
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18641198 120 + 22407834
GCCGUUCGGAAAAUUAGUUUCACUUGUGAAUUGCGCAUCAUUUGGCGACGGCAUUACACAUCGUGUGACAUCGAAACCCAGAAAAAAGCCCAGGGCAUAAAGCUACGCCAGAUUAUGCUG
((.(((((.((............)).))))).))((((.((((((((..(((.((((((...))))))..((........)).....)))...(((.....))).)))))))).)))).. ( -32.90)
>DroSec_CAF1 113970 120 + 1
GUCGUUCGGAAAAUUAGUUUCACUUGUGAAUUGCGCAUCAUUUGGCAACGGCGUUACACAUCGUGUGACAUCGAAACCCAGAAAAAAGCCCAGGGCAUAAAGCUACGCCAGAUUAUGCUG
((.(((((.((............)).))))).))((((.(((((((...((((((((((...))))))).((........)).....)))...(((.....)))..))))))).)))).. ( -33.30)
>DroSim_CAF1 115596 120 + 1
GUCGUUCGGAAAAUUAGUUUCACUUGUGAAUUGCGCAUCAUUUGGCAACGGCGUUACACAUCGUGUGACAUCGAAACCCAGAAAAAAGCCCAGGGCAUAAAGCUACGCCAGAUUAUGCUG
((.(((((.((............)).))))).))((((.(((((((...((((((((((...))))))).((........)).....)))...(((.....)))..))))))).)))).. ( -33.30)
>DroEre_CAF1 112933 120 + 1
GCCGUUCGGAAAAUUAGUUUCAUUGGUGAAUUACGCAUCAUUUGGCGACGAUGUUACACUUCGUGUGACAUCGAAACCCAGAAAUAAGCUCAGGGCAUAAAGCUACGCCAGAUUAUGCUG
((((....((((.....))))..)))).......((((.((((((((.(((((((((((...)))))))))))...(((.((.......)).)))..........)))))))).)))).. ( -40.30)
>DroYak_CAF1 114360 120 + 1
GCCGUUCGGAAAAUUAGUUUCAUUUGUGAAUUGCGCAUCAUUUGGCGACGGCGUUACACUUCGUGUGACAUCGAAACCCAGAAAAAAACCCAGGGCAUAAAGCUACGCCAGAUUAGGCUG
((.(((((.(((..........))).))))).))((...((((((((..((((((((((...))))))).......(((.............)))......))).))))))))...)).. ( -32.92)
>consensus
GCCGUUCGGAAAAUUAGUUUCACUUGUGAAUUGCGCAUCAUUUGGCGACGGCGUUACACAUCGUGUGACAUCGAAACCCAGAAAAAAGCCCAGGGCAUAAAGCUACGCCAGAUUAUGCUG
((.(((((((((.....)))).....))))).))((((.(((((((..(((.(((((((...))))))).)))...(((.............)))...........))))))).)))).. (-29.32 = -29.60 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:08 2006