Locus 6638

Sequence ID 2L_DroMel_CAF1
Location 18,640,415 – 18,640,518
Length 103
Max. P 0.512098
window10586

overview

Window 6

Location 18,640,415 – 18,640,518
Length 103
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 86.18
Mean single sequence MFE -27.84
Consensus MFE -19.68
Energy contribution -21.20
Covariance contribution 1.52
Combinations/Pair 1.06
Mean z-score -1.61
Structure conservation index 0.71
SVM decision value -0.04
SVM RNA-class probability 0.512098
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18640415 103 + 22407834
UUUUAACCCCAUUGAUCUGAUGAUGACUAGCCCAAAGGCAAUCCUGGCCCUUCAGCGAGAUUCUAA-CAAUUGGUUAUGCUUGCUACUAAGGGUAUAUUAAAU--------------U
.........((((.....)))).......(((....))).......((((((.((((((....(((-(.....))))..))))))...)))))).........--------------. ( -21.50)
>DroSec_CAF1 113189 117 + 1
UUUUAACCCCAUUAAUCUGAUGAUGACUAGCCCAAAGGCAAUCCCAGCCCUUCAGCGAGCUUCUAA-CAAUUGGCUGUGCUUGCUACUAAGGGUAUAUUAAAUUUGGAAAGAGAUUUU
........(((..(((.(((((.......(((....))).......((((((.(((((((..(((.-....)))....)))))))...)))))).))))).))))))........... ( -25.40)
>DroSim_CAF1 114815 117 + 1
UUUUAACCCCAUUGAUCUGAUGAUGACUAGCCCAAAGGCAAUCCCAGCCCUUCAGCGAGCUUCUAA-CAAUUGGUUAUGCUUGCUACUAAGGGUAUAUUAAAUUUGGUAACAGAUUUU
.............((((((......(((((((....))).......((((((.(((((((...(((-(.....)))).)))))))...))))))..........))))..)))))).. ( -29.80)
>DroEre_CAF1 112172 116 + 1
UUUUAACCCCAUUGAUCUGAUGAUGACUAGCCCAAAGGCAAUCCUGGCCCUUCAGCGAGCUACCAACUAUUUUGUU--GCUUGCUACUAAGGGUAUAUUAGAUUUGGAAACACAUUUU
........(((..(((((((((.......(((....))).......((((((.(((((((...(((.....)))..--)))))))...)))))).))))))))))))........... ( -32.60)
>DroYak_CAF1 113614 113 + 1
UUUUAACCCCAUUGAUCUGAUGAUGACUAGCCCAAAGGCAGUCCUGGCCCUUCAGCGAGCUACCAA-UAAUUUGUU--G--UGCUACGAAGGGUAUAUUAAGUUUGGAAACGGAUUUU
.........((((.....))))..((((.(((....)))))))...(((((((....(((...(((-(.....)))--)--.)))..))))))).....(((((((....))))))). ( -29.90)
>consensus
UUUUAACCCCAUUGAUCUGAUGAUGACUAGCCCAAAGGCAAUCCUGGCCCUUCAGCGAGCUUCUAA_CAAUUGGUU_UGCUUGCUACUAAGGGUAUAUUAAAUUUGGAAACAGAUUUU
........(((..(((.(((((.......(((....))).......((((((.(((((((..((((....))))....)))))))...)))))).))))).))))))........... (-19.68 = -21.20 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:07 2006