Locus 6637

Sequence ID 2L_DroMel_CAF1
Location 18,640,018 – 18,640,136
Length 118
Max. P 0.676625
window10585

overview

Window 5

Location 18,640,018 – 18,640,136
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 96.95
Mean single sequence MFE -37.80
Consensus MFE -36.44
Energy contribution -36.64
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.15
Structure conservation index 0.96
SVM decision value 0.30
SVM RNA-class probability 0.676625
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18640018 118 + 22407834
ACUGUGGUUGUGCAGGAAUAGGACGAAGAUGGCAGCGGUUGUUUGUGGGCGAGAGUACUUCAAGUUAACCUCUAAUUGCCAUUGCCCCAAGUGCACCGAGCGGCAAUAUGCUGCUCAU
.....(((.(..(.((....((.....((((((((.(((((..((.((((....)).)).))...))))).....)))))))).))))..)..))))(((((((.....))))))).. ( -37.00)
>DroSec_CAF1 112799 118 + 1
ACUAUGGUUGUGCAGGAAUAGGAAGAAGAUGGCAGUGGUUGUUUGUGGGCGAGAGUACUUCAAGUUAACCUCUAAUUGCCAUUGCCCCAAGUGCACCGAGCGGCAAUAUGCUGCUCAU
.....(((.(..(.((....((.....((((((((((((((..((.((((....)).)).))...)))))....))))))))).))))..)..))))(((((((.....))))))).. ( -39.00)
>DroSim_CAF1 114421 118 + 1
ACUGUGGUUGUGCAGGAAUAGGAAGAAGAUGGCAGUGGUUGUUUGUGGGCGAGAGUACUUCAAGUUAACCUCUAAUUGCCAUUGCCCCAAGUGCACCGAGCGGCAAUAUGCUGCUCAU
.....(((.(..(.((....((.....((((((((((((((..((.((((....)).)).))...)))))....))))))))).))))..)..))))(((((((.....))))))).. ( -39.00)
>DroEre_CAF1 111758 118 + 1
ACUGUGGCCGUGCAAGAAUAGGAAGAAGAUGGCAGCGGUUGUUUGUGGGCGAGAGUACUUCAAGUUAACCUCUAAUUGCCAUUGCCCCAAGUGCACCGAGCGGCAAUAUGCUGCUCAU
.........(((((......((.....((((((((.(((((..((.((((....)).)).))...))))).....)))))))).)).....))))).(((((((.....))))))).. ( -37.50)
>DroYak_CAF1 113209 118 + 1
ACUGUGGUUGUGCAAAAAUAGGAAGAAGAUGGCAGCGGUUGUUCGUGGGCGAGAGUACUUCAAGUUAACCUCUAAUUGCCAUUGCCCCAAGUGCACCGAGCGGCAAUAUGCUGCUCAU
.........(((((......((.....((((((((.(((((....(((((....))...)))...))))).....)))))))).)).....))))).(((((((.....))))))).. ( -36.50)
>consensus
ACUGUGGUUGUGCAGGAAUAGGAAGAAGAUGGCAGCGGUUGUUUGUGGGCGAGAGUACUUCAAGUUAACCUCUAAUUGCCAUUGCCCCAAGUGCACCGAGCGGCAAUAUGCUGCUCAU
.........(((((......((.....((((((((.(((((..((.((((....)).)).))...))))).....)))))))).)).....))))).(((((((.....))))))).. (-36.44 = -36.64 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:06 2006