Locus 6636

Sequence ID 2L_DroMel_CAF1
Location 18,638,887 – 18,638,987
Length 100
Max. P 0.799477
window10584

overview

Window 4

Location 18,638,887 – 18,638,987
Length 100
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 85.04
Mean single sequence MFE -19.75
Consensus MFE -17.19
Energy contribution -17.00
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -1.69
Structure conservation index 0.87
SVM decision value 0.61
SVM RNA-class probability 0.799477
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18638887 100 + 22407834
-----ACUAAAAUCACAUUGAAGUUAAUAUACCCGAUUAAUGCUCACCACUGACUCCUUUCGUUCCGCCGUUUGUUGCAUUCACCGCGUUGACAACAAAUGGCAC
-----.......(((...(((.((((((.......))))))..)))....))).............(((((((((((((..........)).))))))))))).. ( -20.30)
>DroSec_CAF1 111649 100 + 1
-----ACUAAAAUCACAUUGAAGUUAAUAUGCCCGAUUAAUGCUCACCACUGACUCCUUUCGUUCCGCCGUUUGUUGCAUUCACCGCGUUGACAACAAAUGGCAC
-----.......(((...(((.((((((.......))))))..)))....))).............(((((((((((((..........)).))))))))))).. ( -20.30)
>DroSim_CAF1 113267 100 + 1
-----ACUAAAAUCACAUUGAAGUUAAUAUGCCCGAUUAAUGCUCACCACUGACUCCUUUCGUUCCGCCAUUUGUUGCAUUCACCGCGUUGACAACAAAUGGCAC
-----.......(((...(((.((((((.......))))))..)))....))).............(((((((((((((..........)).))))))))))).. ( -20.70)
>DroEre_CAF1 110662 88 + 1
CUAUGAUUAAAAUUACA-----------------AAAUGAUGCUCACCACUGACUCCUUUCGUUCCGCCGUUUGUUGCAUUCCCCGAGUUGACAACAAAUGGCAC
.................-----------------.(((((...(((....)))......)))))..((((((((((((((((...))).)).))))))))))).. ( -17.70)
>consensus
_____ACUAAAAUCACAUUGAAGUUAAUAUGCCCGAUUAAUGCUCACCACUGACUCCUUUCGUUCCGCCGUUUGUUGCAUUCACCGCGUUGACAACAAAUGGCAC
..................................................................(((((((((((((..........)).))))))))))).. (-17.19 = -17.00 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:05 2006