Locus 6634

Sequence ID 2L_DroMel_CAF1
Location 18,635,556 – 18,635,661
Length 105
Max. P 0.774938
window10582

overview

Window 2

Location 18,635,556 – 18,635,661
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.29
Mean single sequence MFE -32.55
Consensus MFE -18.91
Energy contribution -20.63
Covariance contribution 1.72
Combinations/Pair 1.08
Mean z-score -2.77
Structure conservation index 0.58
SVM decision value 0.54
SVM RNA-class probability 0.774938
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18635556 105 + 22407834
GCAUGAACAAGGCGAAAGCCGUCCACUCGAAUGGGCCUUAUAUAUU--AUUUGCCCAUAUCUA--------UAUCUUUGAUCGCUUCUA-----UGCACAUUUCUGUGUAGAGGCGUUGU
....((.((((((....)))........((((((((..((.....)--)...)))))).))..--------.....))).))(((((((-----((((......)))))))))))..... ( -33.20)
>DroSec_CAF1 108434 102 + 1
GCAUGAACAAGGCGAAAGCCGUCCACUCGAAUGGGCCUUAUAUA-----UUUGCCCAUAUCUA--------UAUCUUUGAUCGCUUCUA-----UGCACAUUUCUGUGUAGAGGCGUUGU
....((.((((((....)))........((((((((........-----...)))))).))..--------.....))).))(((((((-----((((......)))))))))))..... ( -32.90)
>DroSim_CAF1 110007 102 + 1
GCAUGAACAAGGCGAAAGCCGUCCACUCGAAUGGGCCUUAUAUA-----UUUGCCCAUAUCUA--------UAUCUUUGAUCGCUUCUA-----UGCACAUUUCUGUGUAGAGGCGUUGU
....((.((((((....)))........((((((((........-----...)))))).))..--------.....))).))(((((((-----((((......)))))))))))..... ( -32.90)
>DroEre_CAF1 107350 102 + 1
GCAUGAACAAGGCGAAAGCCGUCCACUCGAAUGGGCCUUAUAUA-----UUUGCCCAUAUCUA--------UAUCUUUGAUCGCUUCUA-----UGCACAUUUCUGUGUAGAGGCGUUGU
....((.((((((....)))........((((((((........-----...)))))).))..--------.....))).))(((((((-----((((......)))))))))))..... ( -32.90)
>DroYak_CAF1 108764 107 + 1
GCAUGAACAAGGCGAAAGCCGUCCACUCGAAUGGGCCUUAUAUA-----UUUGCCCAUAUCUA--------UAUCUUUGAUCGCUUCUAUGCUAUGCACAUUUCUGUGUAGAGGCGUUGU
....((.((((((....)))........((((((((........-----...)))))).))..--------.....))).))((((((((((.............))))))))))..... ( -31.22)
>DroAna_CAF1 98580 97 + 1
GCACGAACAAGGCGAAAG-------------UGGGC-UUUUAUGUUGGAUAUGC-CGGGUCUAGGCAGGGGUAUAUGUGAGCAUUUCUA-----UGCCCAUUUCAGUCUUUGG---CUGG
((.(((...((((..(((-------------(((((-....(((((.(((((((-(..((....))...))))))).).))))).....-----.))))))))..))))))))---)... ( -32.20)
>consensus
GCAUGAACAAGGCGAAAGCCGUCCACUCGAAUGGGCCUUAUAUA_____UUUGCCCAUAUCUA________UAUCUUUGAUCGCUUCUA_____UGCACAUUUCUGUGUAGAGGCGUUGU
....((.((((((....)))..........((((((................))))))..................))).))((((((.......((((......))))))))))..... (-18.91 = -20.63 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:03 2006