Locus 6633

Sequence ID 2L_DroMel_CAF1
Location 18,634,615 – 18,634,716
Length 101
Max. P 0.573080
window10581

overview

Window 1

Location 18,634,615 – 18,634,716
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.17
Mean single sequence MFE -24.75
Consensus MFE -19.15
Energy contribution -20.24
Covariance contribution 1.09
Combinations/Pair 1.08
Mean z-score -1.36
Structure conservation index 0.77
SVM decision value 0.08
SVM RNA-class probability 0.573080
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18634615 101 + 22407834
AAAA-CAAAA-----AAAAUACAGUUGCGUAGCUU-----GGCUAAGCCCACAAGGCGGCGAUGAACAGAUAUCGAAAAUUGGGUUAAGCAACCUGUAG-----UGGC---CAGGUGUAU
...(-((...-----....(((((((((.(((((.-----.(....(((.....)))..(((((......)))))....)..))))).)))).))))).-----....---....))).. ( -24.69)
>DroSec_CAF1 107477 109 + 1
AAAA-CAAAAAAAAUAAAAUACAGUUGCGUAGCUU-----GGCUAAGCCCACAAGGCGGCGAUGAACAGAUAUCGAAAAUUGGGUUAAGCAACCUGUAG-----UGGCCGCCAGGUGUAU
....-.............(((((.((((.((((..-----.)))).))......((((((((((......)))).......(((((....)))))....-----..)))))))).))))) ( -26.90)
>DroSim_CAF1 109054 107 + 1
AAAA-CAAAACAA--AAAAUACAAUUGCGUAGCUU-----GGCUAAGCCCACAAGGCGGCGAUGAACAGAUAUCGAAAAUUGGGUUAAGCAACCUGUAG-----UGGCCGCCAGGUGUAU
....-........--...........((.((((..-----.)))).)).(((..((((((((((......)))).......(((((....)))))....-----..))))))..)))... ( -26.50)
>DroEre_CAF1 106372 94 + 1
AA-------------AAAAUACAGUUGCGUAGCUU-----GGCUAAGCCCACAAGCCAGCGAUGAACAGAUACCGAAAAUUGGGUUAAGCAACCUGUAG-----UGGC---CAGUUGUAU
..-------------....(((((((((...(((.-----((((.........)))))))............((((...)))).....)))).))))).-----....---......... ( -20.60)
>DroYak_CAF1 107779 96 + 1
AAAA-----------AAAAUACAGUUGCGUAGCUU-----GGCUAAGCCCACAAGCCAGCGAUGAACAGAUAUCGAAAAUUGGGUUAAGCAACCUGUAG-----UGGC---CAGGUGUAU
....-----------...(((((.(((.((.(((.-----.(((.((((((........(((((......))))).....)))))).))).......))-----).))---))).))))) ( -23.72)
>DroAna_CAF1 97831 105 + 1
AAAAACGCUAAAA--AAAAUGAAGUUGCGUAGCCGGAGCGGGCUAAGCCCACAAGCC----------AGAUAUCGAAAAUUGGGUUAAACAACCUGCACACACCUGGC---CAGGUGUAU
....((((.....--...........)))).((.((.(.((((...)))).).((((----------.(((.......))).))))......)).))..((((((...---.)))))).. ( -26.09)
>consensus
AAAA_CAAAA_____AAAAUACAGUUGCGUAGCUU_____GGCUAAGCCCACAAGCCGGCGAUGAACAGAUAUCGAAAAUUGGGUUAAGCAACCUGUAG_____UGGC___CAGGUGUAU
...................(((((((((.(((((......)))))((((((........(((((......))))).....))))))..)))).)))))...................... (-19.15 = -20.24 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:02 2006