Locus 6630

Sequence ID 2L_DroMel_CAF1
Location 18,625,897 – 18,626,016
Length 119
Max. P 0.994425
window10575

overview

Window 5

Location 18,625,897 – 18,626,016
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.41
Mean single sequence MFE -24.82
Consensus MFE -23.31
Energy contribution -23.53
Covariance contribution 0.22
Combinations/Pair 1.04
Mean z-score -1.82
Structure conservation index 0.94
SVM decision value 2.48
SVM RNA-class probability 0.994425
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18625897 119 + 22407834
AAGCCAUUAAAAAAUUAAUUGGCUGCCUUCCCUUCGGGCGG-AACACGCCCCAUACAUCGCACUAAUGCCGCUUUUAGCCAAGUUAAAUGCUUCCCACCCAAAACAAACGCCCCAGAAGA
.(((((((((....)))).))))).......(((((((((.-....)))))........(((....))).((.((((((...)))))).))........................)))). ( -25.90)
>DroSec_CAF1 103405 119 + 1
AAGCCAUUAAAAAAUUAAUUGGCUGCCUUCCUUUCGGGCGG-AACACGCCCCAUACAUCGCACUAAUGCCGCUUUUAGCCAAGUUAAAUGCUUCCCACCCAAAACAAACGCCCUAGAAGA
.(((((((((....)))).)))))..((((.....(((((.-....)))))........(((....))).((.((((((...)))))).))........................)))). ( -25.00)
>DroSim_CAF1 105024 119 + 1
AAGCCAUUAAAAAAUUAAUUGGCUGCCUUCCCUUCGGGCGG-AACACGCCCCAUACAUCGCACUAAUGCCGCUUUUAGCCAAGUUAAAUGCUUCCCACCCAAAACAAACGCCCCAGAAGA
.(((((((((....)))).))))).......(((((((((.-....)))))........(((....))).((.((((((...)))))).))........................)))). ( -25.90)
>DroEre_CAF1 102420 119 + 1
AAGCCAUUAAAAAAUUAAUUGGCUGCCUUCCCUUCGGGCGG-AACACGCCCCAUACAUCGCACUAAUGCCGCUUUUAGCCAAGUUAAAUGCUUCCCACCCAAAACAAACGCCCCAGAAGA
.(((((((((....)))).))))).......(((((((((.-....)))))........(((....))).((.((((((...)))))).))........................)))). ( -25.90)
>DroYak_CAF1 103864 119 + 1
AAGCCAUUAAAAAAUUAAUUGGCUGCCUUCCCUUCGGGCGG-AACACGCCCCAUACAUCGCACUAAUGCCGCUUUUAGCCAAGUUAAAUGCUUCCCACCCAAAACAACUGCCCCAGAAGA
.(((((((((....)))).))))).......((((((((((-.................(((....))).((.((((((...)))))).))................))))))..)))). ( -26.40)
>DroAna_CAF1 93575 107 + 1
GAGCCAUUAAAAAAUUAAUUGGCUGCCUUCCCUUCGGGCCGUGCCACGCCCCAUACAUCGGACUAAUGCCGCUUUUAGCCAAGUUAAAUGCUUCCC-------------GCCCCAGAAAA
.(((((((((....)))).)))))...........((((....................((.(....)))((.((((((...)))))).)).....-------------))))....... ( -19.80)
>consensus
AAGCCAUUAAAAAAUUAAUUGGCUGCCUUCCCUUCGGGCGG_AACACGCCCCAUACAUCGCACUAAUGCCGCUUUUAGCCAAGUUAAAUGCUUCCCACCCAAAACAAACGCCCCAGAAGA
.(((((((((....)))).))))).......(((((((((......)))))...................((.((((((...)))))).))........................)))). (-23.31 = -23.53 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:56 2006