Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,964,699 – 1,964,799 |
Length | 100 |
Max. P | 0.999762 |
Location | 1,964,699 – 1,964,799 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 96.81 |
Mean single sequence MFE | -31.66 |
Consensus MFE | -29.26 |
Energy contribution | -29.66 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.62 |
Structure conservation index | 0.92 |
SVM decision value | 3.92 |
SVM RNA-class probability | 0.999706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1964699 100 + 22407834 AUGGACGAAAGCGAAAGGGCAGAGAUAAAAAAUCGCCACGACUGCAAAUGGGUAAAUUACUCCAUUUAGGGCUGUCGUGGGUUAAGCCAGGGUUGUCUG-G ..((((((...(....)(((...(((.....))).(((((((.(((((((((((...))).))))))...)).))))))).....)))....)))))).-. ( -33.30) >DroSec_CAF1 7169 100 + 1 AUGGACGAAAGCGAAAGGGCAGAGAUAAAAAAUCGCCACGACUGCAAAUGGGUAAAUUACUCCAUUUAGGGCUGUCGUGGGUUAGGCCAGGGGUGUCUG-G ..(((((....(....)(((...(((.....))).(((((((.(((((((((((...))).))))))...)).))))))).....))).....))))).-. ( -31.80) >DroSim_CAF1 11323 100 + 1 AUGGACGAAAGCGAAAGGGCAGAGAUAAAAAAUCGCCACGACUGCAAAUGGGUAAAUUACUCCAUUUAGGGCUGUCGUGGGUUAAGCCUGGGGUGUCUG-G ..(((((....(....)(((...(((.....))).(((((((.(((((((((((...))).))))))...)).))))))).....))).....))))).-. ( -31.50) >DroEre_CAF1 16316 100 + 1 ACGGACGAAAGCGAAAGGGCAGAGAUAAAAAAUCGCCACGACUGCAAAUGGGUAAAUUACUCCAUUUAGGGCUGUCGUGGGUUAAGCAGGGGCUGUCUG-G .(((((.....(....)(((...(((.....))).(((((((.(((((((((((...))).))))))...)).)))))))...........))))))))-. ( -32.10) >DroYak_CAF1 14216 101 + 1 AUGGACGAAAGCGAAAGGGCAGAGAUAAAAAAUCGCCACGACUGCAAAUGGGUAAAUUACUCCAUUUAGGGCUGUCGUGGGUUAAGCAAGGGGUGUCUGUG (((((((....(....).((...(((.....))).(((((((.(((((((((((...))).))))))...)).))))))).....))......))))))). ( -29.60) >consensus AUGGACGAAAGCGAAAGGGCAGAGAUAAAAAAUCGCCACGACUGCAAAUGGGUAAAUUACUCCAUUUAGGGCUGUCGUGGGUUAAGCCAGGGGUGUCUG_G ..(((((....(....)(((...(((.....))).(((((((.(((((((((((...))).))))))...)).))))))).....))).....)))))... (-29.26 = -29.66 + 0.40)
Location | 1,964,699 – 1,964,799 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 96.81 |
Mean single sequence MFE | -23.64 |
Consensus MFE | -22.97 |
Energy contribution | -22.97 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.97 |
SVM decision value | 4.02 |
SVM RNA-class probability | 0.999762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1964699 100 - 22407834 C-CAGACAACCCUGGCUUAACCCACGACAGCCCUAAAUGGAGUAAUUUACCCAUUUGCAGUCGUGGCGAUUUUUUAUCUCUGCCCUUUCGCUUUCGUCCAU (-(((......)))).......((((((.((...((((((.(((...))))))))))).))))))((((..................)))).......... ( -23.97) >DroSec_CAF1 7169 100 - 1 C-CAGACACCCCUGGCCUAACCCACGACAGCCCUAAAUGGAGUAAUUUACCCAUUUGCAGUCGUGGCGAUUUUUUAUCUCUGCCCUUUCGCUUUCGUCCAU (-(((......)))).......((((((.((...((((((.(((...))))))))))).))))))((((..................)))).......... ( -23.97) >DroSim_CAF1 11323 100 - 1 C-CAGACACCCCAGGCUUAACCCACGACAGCCCUAAAUGGAGUAAUUUACCCAUUUGCAGUCGUGGCGAUUUUUUAUCUCUGCCCUUUCGCUUUCGUCCAU .-...........(((.....(((((((.((...((((((.(((...))))))))))).))))))).(((.....)))...)))................. ( -23.50) >DroEre_CAF1 16316 100 - 1 C-CAGACAGCCCCUGCUUAACCCACGACAGCCCUAAAUGGAGUAAUUUACCCAUUUGCAGUCGUGGCGAUUUUUUAUCUCUGCCCUUUCGCUUUCGUCCGU .-..((.(((....((.....(((((((.((...((((((.(((...))))))))))).))))))).(((.....)))...))......))).))...... ( -23.80) >DroYak_CAF1 14216 101 - 1 CACAGACACCCCUUGCUUAACCCACGACAGCCCUAAAUGGAGUAAUUUACCCAUUUGCAGUCGUGGCGAUUUUUUAUCUCUGCCCUUUCGCUUUCGUCCAU ....(((...............((((((.((...((((((.(((...))))))))))).))))))((((..................))))....)))... ( -22.97) >consensus C_CAGACACCCCUGGCUUAACCCACGACAGCCCUAAAUGGAGUAAUUUACCCAUUUGCAGUCGUGGCGAUUUUUUAUCUCUGCCCUUUCGCUUUCGUCCAU ....(((...............((((((.((...((((((.(((...))))))))))).))))))((((..................))))....)))... (-22.97 = -22.97 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:19 2006