Locus 6627

Sequence ID 2L_DroMel_CAF1
Location 18,622,402 – 18,622,518
Length 116
Max. P 0.719144
window10570

overview

Window 0

Location 18,622,402 – 18,622,518
Length 116
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 87.95
Mean single sequence MFE -20.26
Consensus MFE -15.64
Energy contribution -15.52
Covariance contribution -0.12
Combinations/Pair 1.15
Mean z-score -1.71
Structure conservation index 0.77
SVM decision value 0.40
SVM RNA-class probability 0.719144
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18622402 116 - 22407834
UUUAUUCAUACUUCUCUGGAAAUUUGUGUUCAUUGGACAUUUUCUCAUGAAUGUCACGUUCACAGUUGAAAUGCACAAAUUUU-UGUUGAUAUUUACGUUUAUUU--UUUAUUUGCAUU
............((..(..((((((((((......(((((((......)))))))...((((....))))..)))))))))).-.)..))...............--............ ( -19.80)
>DroSec_CAF1 99947 118 - 1
UUUAUUCAUACUUCUCUGGAAAUUUGUGUUUAUUGGACAUUUUCUCAUGAAUGUCACGUUCACAGUUGAAAUGCACAAAUUUU-UGUUGAUAUUUACGUUUAUUUUUUUUAUUUGCAUU
............((..(..((((((((((......(((((((......)))))))...((((....))))..)))))))))).-.)..))............................. ( -19.80)
>DroSim_CAF1 101395 118 - 1
UUUAUUCAUACUUCUCUGGAAAUUUGUGUUCAUUGGACAUUUUCUCAUGAAUGUCACGUUCACAGUUGAAAUGCACAAAUUUU-UGUUGAUAUUUACGUUUAUUUUUUUUAUUUGCGUU
............((..(..((((((((((......(((((((......)))))))...((((....))))..)))))))))).-.)..)).....((((..((.......))..)))). ( -21.60)
>DroEre_CAF1 98853 116 - 1
UUCAUUCAUACUUCUCUGAAAAUUUGUGUUCAUCGGACAUUUUCUCAUGAAUGUCACGUUCACAGUUGAAAUGCACAAAUUUU-UGUUGAUAUUUACGUUUAUUU--UUUAUCCUCAUU
............((..(((((((((((((....(((((((((......))))))).))((((....))))..)))))))))))-))..))...............--............ ( -21.00)
>DroAna_CAF1 90991 108 - 1
UUUAUUCACAUUUCUUUAGAAAUUUGUGCUCGCCGAACGUUUUCCCAUGAAUGUCACGUUCGCAAUUGAAAUACAAAAAUUUUGUGUUGAUAUUUGCGUUUAUUU--UUU---------
......((((((((....))))..))))......((((((.(((....)))....))))))((((....(((((((.....))))))).....))))........--...--------- ( -19.10)
>consensus
UUUAUUCAUACUUCUCUGGAAAUUUGUGUUCAUUGGACAUUUUCUCAUGAAUGUCACGUUCACAGUUGAAAUGCACAAAUUUU_UGUUGAUAUUUACGUUUAUUU__UUUAUUUGCAUU
............((....(((((((((((....(((((((((......))))))).))((((....))))..))))))))))).....))............................. (-15.64 = -15.52 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:51 2006