Locus 6626

Sequence ID 2L_DroMel_CAF1
Location 18,619,784 – 18,619,902
Length 118
Max. P 0.986825
window10569

overview

Window 9

Location 18,619,784 – 18,619,902
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.39
Mean single sequence MFE -32.20
Consensus MFE -30.50
Energy contribution -30.34
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.95
SVM decision value 2.06
SVM RNA-class probability 0.986825
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18619784 118 - 22407834
UCCCCUCCGCCAGAAAGACAAUUUGCCACAUCCAUUGCUCUUAGCGUCGCAGAACCCGACCCCCCAA--AAGCCCCACGCUUGCCCCUUCAAGUCUUGUGGCACACAGCUGGCGGCAAGC
......(((((((..........(((((((....(((......((((((.......)))).......--((((.....)))))).....)))....))))))).....)))))))..... ( -30.86)
>DroSec_CAF1 97262 118 - 1
UCCCCUCCGCCAGAAAGACAAUUUGCCACAUCCAUUGCUCUUAGCGUCGCAGACCCCGACCCCCCAA--AAGCCCUACGCUUGCCCCUUCAAGUCUUGUGGCACACAGCUGGCGGCAAGC
......(((((((..........(((((((....(((......((((((.......)))).......--((((.....)))))).....)))....))))))).....)))))))..... ( -30.86)
>DroSim_CAF1 98732 118 - 1
UCCCCUCCGCCAGAAAGACAAUUUGCCACAUCCAUUGCUCUUAGCGUCGCAGACCCCGACCCCCCAA--AAGCCCCACGCUUGCCCCUUCAAGUCUUGUGGCACACAGCUGGCGGCAAGC
......(((((((..........(((((((....(((......((((((.......)))).......--((((.....)))))).....)))....))))))).....)))))))..... ( -30.86)
>DroEre_CAF1 96253 120 - 1
UCCCCUCCGCCAGAAAGACAAUUUGCCACAUCCAUUGCUCUCAGCGUCGCAGACCCCGACCCCGAAAACAAGCCCUUCGCUUGCCCCUUCAAGUAUUGUGGCACACAGCUGGCGGCAAGC
......(((((((..........(((((((....(((...((.(.((((.......)))).).))...(((((.....)))))......)))....))))))).....)))))))..... ( -32.66)
>DroYak_CAF1 97403 120 - 1
UCCCCUCCGCCAGAAAGACAAUUUGCCACAUCCAUUGCUCUUAGCGUCGCAGACCCCGACCCCGAAAGCAAGUCCCUCGCUUGCCCCUUCAAGUAUUGUGGCACACAGCUGGCGGCAAGC
......(((((((..........(((((((....(((((.(..(.((((.......)))).)..).))))).......(((((......)))))..))))))).....)))))))..... ( -35.76)
>consensus
UCCCCUCCGCCAGAAAGACAAUUUGCCACAUCCAUUGCUCUUAGCGUCGCAGACCCCGACCCCCCAA__AAGCCCCACGCUUGCCCCUUCAAGUCUUGUGGCACACAGCUGGCGGCAAGC
......(((((((..........(((((((....(((......((((((.......)))).........((((.....)))))).....)))....))))))).....)))))))..... (-30.50 = -30.34 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:50 2006